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[180291_at]

Description E03H4.11 /REP_DB=WormBase Gene ID /WP=CE09137 /TR=O17750 /GB=CAB04032.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 4.3
(-3)
A 		4.8
(-2.8)
A 		5.5
(-2.5)
A 		19
(3)
A 		15
B 18.7
(-1)
A 		33.4
(0.9)
A 		3.3
(-3)
A 		49.4
(3)
A 		46
C 11
(-2.4)
A 		6.3
(-3)
A 		32.5
(0.3)
A 		54.5
(3)
A 		48
avr 11.3
(-3) 		14.8
(-2.3) 		13.8
(-2.5) 		41
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11.6
(-1.3)
A 		17.1
(-0.3)
A 		3.5
(-2.9)
A 		34
(3)
A 		3.1
(-2.9)
A 		2.8
(-3)
A 		31
B 31.1
(1.6)
A 		39.4
(3)
A 		36.5
(2.5)
A 		3.4
(-3)
A 		6.9
(-2.4)
A 		9.8
(-1.9)
A 		36
C 4.7
(-2)
A 		14.9
(1.9)
A 		4.3
(-2.2)
A 		7.2
(-1.1)
A 		2.1
(-3)
A 		17.8
(3)
A 		16
avr 15.8
(0.6) 		23.8
(3) 		14.8
(0.3) 		14.9
(0.3) 		4
(-3) 		10.1
(-1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.6
(-1)
A 		1
(-3)
A 		1.4
(-1.7)
A 		2.8
(3)
A 		2
B 6
(0.2)
A 		8.3
(1.6)
A 		0.8
(-3)
A 		10.5
(3)
A 		10
C 3.6
(-1.9)
A 		1.8
(-3)
A 		11.3
(3)
A 		9.2
(1.7)
A 		10
avr 3.7
(-3) 		3.7
(-3) 		4.5
(-1.7) 		7.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.1
(-1.9)
A 		6.1
(1.1)
A 		0.8
(-2.9)
A 		8.6
(3)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		8
B 10.8
(1.9)
A 		13.1
(3)
A 		8.9
(0.9)
A 		0.9
(-3)
A 		2.8
(-2.1)
A 		3.7
(-1.6)
A 		12
C 1.7
(-1.8)
A 		4.5
(1.4)
A 		1.1
(-2.5)
A 		1.5
(-2.1)
A 		0.7
(-3)
A 		5.9
(3)
A 		5
avr 4.9
(0.2) 		7.9
(3) 		3.6
(-1) 		3.7
(-0.9) 		1.5
(-3) 		3.4
(-1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1852
Sequence Type Exemplar sequence
Representative Public ID E03H4.11 NCBI
Target Description E03H4.11 /REP_DB=WormBase Gene ID /WP=CE09137 /TR=O17750 /GB=CAB04032.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060752 NCBI Caenorhabditis elegans E03H4.11 (E03H4.11) mRNA, complete cds. 11/11 None
SNAP00000031045 ENSEMBL cdna:SNAP chromosome:CEL140:I:12441182:12443007:1 11/11 None
GENEFINDER00000031054 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12441251:12443007:1 11/11 None
E03H4.11 ENSEMBL cdna:known chromosome:CEL140:I:12441182:12443007:1 gene:E03H4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12441112-12442938(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H4.11
Entrez Gene 184024 Entrez gene
SwissProt O17750 EMBL-EBI
WormBase CE09137 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04032 Hypothetical protein E03H4.11 [Caenorhabditis elegans] ref|NP_493153.1| E03H4.11 [Caenorhabditis elegans] 0.0
blast CAB05465 Hypothetical protein C54C8.3 [Caenorhabditis elegans] ref|NP_493158.2| C54C8.3 [Caenorhabditis elegans] 1.0E-149
blast CAB05465 Hypothetical protein C54C8.3 [Caenorhabditis elegans] ref|NP_493158.2| C54C8.3 [Caenorhabditis elegans] 1.0E-142
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 1.2E-108
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 1.2E-108
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 1.2E-108
Sequence
Target Sequence 
>C. ELEGANS:180291_AT
ataagtcactggcgattcttctctacggagtcagcaaagctccacgataccaaatgatcg
ggaaaatcgatgaagacgtcatattcttcccggataagcttactgcactctacgagcaag
gtatcatagatgctactccactttgcgcctatgggtacaaaatccaagctggagctcgta
tattccgtgacaagaacgatcgatggtatgttccggagtcttcctactcttgctccaaat
ttcccgagtatgtctcgggaatgttgtacatggtcacttgggaggctgcgcagcagatca
tcaagtctacgaagtatcgagattttattcaggtggaagacgtgtttcttactggaattc
ttgcggaagacctgggaatttctgtgaggaacttgccaaaattctacaagtacccgaacg
atattgatgaatccaaatcggtggatataattgcatggcacaacgaccaaaaagacatcc
aatacttgaattttttcaagaaagggctggccagatatcaaaacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGTCACTGGCGATTCTTCTCTA 618 25 596 Antisense
CAGCAAAGCTCCACGATACCAAATG 220 203 627 Antisense
ATGAAGACGTCATATTCTTCCCGGA 154 45 665 Antisense
GATAAGCTTACTGCACTCTACGAGC 99 423 688 Antisense
TCATAGATGCTACTCCACTTTGCGC 126 621 719 Antisense
TCCACTTTGCGCCTATGGGTACAAA 622 587 732 Antisense
GGAGCTCGTATATTCCGTGACAAGA 466 519 766 Antisense
AACGATCGATGGTATGTTCCGGAGT 248 145 790 Antisense
AGACGTGTTTCTTACTGGAATTCTT 192 71 933 Antisense
GCGGAAGACCTGGGAATTTCTGTGA 658 291 958 Antisense
AGGGCTGGCCAGATATCAAAACGAG 68 57 1098 Antisense
Sequence Source Affymetrix Proprietary Database