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[180290_at]

Description T26E4.10 /REP_DB=WormBase Gene ID /WP=CE16481 /TR=O45834 /GB=CAB03429.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 05      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 14.8
(-1)
A 		6.5
(-3)
A 		13.7
(-1.3)
A 		31.2
(3)
A 		25
B 17.7
(3)
A 		6.6
(-3)
A 		8.3
(-2.1)
A 		7.1
(-2.7)
A 		11
C 12.5
(-1.8)
A 		7.6
(-2.4)
A 		3
(-3)
A 		48.8
(3)
A 		46
avr 15
(-0.8) 		6.9
(-3) 		8.3
(-2.6) 		29
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 18.3
(-3)
A 		75.8
(-0.2)
A 		62
(-0.9)
A 		108.9
(1.4)
A 		97.4
(0.9)
A 		140.7
(3)
P 		122
B 5.3
(-3)
A 		70.4
(-0.5)
A 		90.9
(0.3)
A 		55.2
(-1.1)
A 		131.6
(1.9)
M 		159.3
(3)
P 		154
C 4.9
(-3)
A 		88
(-0.5)
A 		48.4
(-1.7)
A 		60.6
(-1.3)
A 		133.1
(0.8)
P 		205.1
(3)
P 		200
avr 9.5
(-3) 		78.1
(-0.4) 		67.1
(-0.8) 		74.9
(-0.5) 		120.7
(1.2) 		168.4
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.4
(3)
A 		1.4
(-3)
A 		3.6
(0.3)
A 		4.6
(1.8)
A 		4
B 5.6
(3)
A 		1.6
(-2.9)
A 		1.9
(-2.4)
A 		1.5
(-3)
A 		4
C 4.1
(-0.4)
A 		2.2
(-2)
A 		1
(-3)
A 		8.2
(3)
A 		7
avr 5
(3) 		1.7
(-3) 		2.2
(-2.1) 		4.8
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 3.4
(-3)
A 		26.9
(1.6)
A 		13.5
(-1)
A 		27.6
(1.7)
A 		29.4
(2.1)
A 		34.2
(3)
P 		31
B 1.8
(-3)
A 		23.4
(-0.8)
A 		22.1
(-0.9)
A 		14.6
(-1.7)
A 		53.5
(2.4)
M 		59.4
(3)
P 		58
C 1.8
(-3)
A 		26.9
(-0.7)
A 		12.3
(-2.1)
A 		12.2
(-2.1)
A 		43.1
(0.7)
P 		68.7
(3)
P 		67
avr 2.3
(-3) 		25.7
(-0.3) 		16
(-1.4) 		18.1
(-1.2) 		42
(1.6) 		54.1
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13911
Sequence Type Exemplar sequence
Representative Public ID T26E4.10 NCBI
Target Description T26E4.10 /REP_DB=WormBase Gene ID /WP=CE16481 /TR=O45834 /GB=CAB03429.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074538(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074538 NCBI Caenorhabditis elegans T26E4.10 (T26E4.10) mRNA, complete cds. 11/11 None
SNAP00000017598 ENSEMBL cdna:SNAP chromosome:CEL140:V:15800463:15800792:-1 11/11 None
T26E4.10 ENSEMBL cdna:known chromosome:CEL140:V:15800463:15800792:-1 gene:T26E4.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15800462-15800792(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.10
Entrez Gene 188936 Entrez gene
SwissProt O45834 EMBL-EBI
WormBase CE16481 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03429 Hypothetical protein T26E4.10 [Caenorhabditis elegans] ref|NP_506939.1| T26E4.10 [Caenorhabditis elegans] 2.0E-23
blast CAB03428 Hypothetical protein T26E4.9 [Caenorhabditis elegans] ref|NP_506940.1| T26E4.9 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506939.1 1 5-27
T26E4.10 1 5-27
SNAP00000017598 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:180290_AT
cgttttttgacattcactctattcttcgtaatcctcgcaatttcgactacttttagtaat
gtagttcagggaaatgaagagaccgcactcgatagtacttatgacatggttcctggagaa
ggtgtgctcgggcagttgattcgagccaagcgccagtggggttgtggatgcgattgctgg
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTTTTTGACATTCACTCTATTCT 608 247 22 Antisense
ACATTCACTCTATTCTTCGTAATCC 324 105 31 Antisense
GTAATCCTCGCAATTTCGACTACTT 168 463 49 Antisense
TCAGGGAAATGAAGAGACCGCACTC 298 607 87 Antisense
GAGACCGCACTCGATAGTACTTATG 463 393 100 Antisense
AGTACTTATGACATGGTTCCTGGAG 471 59 115 Antisense
GTTCCTGGAGAAGGTGTGCTCGGGC 642 441 130 Antisense
GAAGGTGTGCTCGGGCAGTTGATTC 465 335 139 Antisense
CGGGCAGTTGATTCGAGCCAAGCGC 66 245 150 Antisense
CGAGCCAAGCGCCAGTGGGGTTGTG 626 247 163 Antisense
TGGGGTTGTGGATGCGATTGCTGGG 647 553 178 Antisense
Sequence Source Affymetrix Proprietary Database