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[180289_at]

Description F59D12.3 /REP_DB=WormBase Gene ID /WP=CE19908 /TR=Q9XUV6 /GB=CAB04541.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 108.5
(2.7)
P 		31.5
(-3)
A 		74.2
(0.2)
A 		112.4
(3)
P 		81
B 107.1
(3)
P 		47.6
(-1)
A 		18.8
(-3)
A 		71.3
(0.6)
A 		88
C 105.3
(3)
P 		53
(-1.5)
A 		35.9
(-3)
A 		103.9
(2.9)
P 		69
avr 107
(3) 		44
(-2.9) 		43
(-3) 		95.9
(2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 41
(-1.7)
A 		31.9
(-3)
A 		31.9
(-3)
A 		56.3
(0.6)
A 		72.5
(3)
P 		55.7
(0.5)
A 		41
B 68.5
(3)
A 		52.9
(-3)
P 		59.9
(-0.3)
A 		65.5
(1.8)
A 		53.7
(-2.7)
A 		58.5
(-0.8)
A 		16
C 45.9
(-1)
A 		54.6
(0.8)
A 		54.5
(0.8)
A 		65.5
(3)
A 		36
(-3)
A 		45.3
(-1.1)
P 		30
avr 51.8
(-1) 		46.5
(-3) 		48.8
(-2.1) 		62.4
(3) 		54.1
(-0.1) 		53.2
(-0.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 39.5
(3)
P 		6.8
(-3)
A 		19.4
(-0.7)
A 		16.5
(-1.2)
P 		33
B 34.2
(3)
P 		11.7
(-1.5)
A 		4.4
(-3)
A 		15.2
(-0.8)
A 		30
C 34.9
(3)
P 		15.2
(-2.3)
A 		12.5
(-3)
A 		17.5
(-1.7)
P 		22
avr 36.2
(3) 		11.2
(-3) 		12.1
(-2.8) 		16.4
(-1.8) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.6
(-2.7)
A 		11.3
(-1.2)
A 		6.9
(-3)
A 		14.3
(-0)
A 		21.9
(3)
P 		13.6
(-0.3)
A 		15
B 23.8
(3)
A 		17.6
(-1)
P 		14.6
(-3)
A 		17.4
(-1.2)
A 		21.8
(1.7)
A 		21.8
(1.7)
A 		9
C 17
(3)
A 		16.6
(2.6)
A 		13.9
(-0.4)
A 		13.2
(-1.2)
A 		11.6
(-3)
A 		15.2
(1)
P 		5
avr 16.1
(0.9) 		15.2
(0.1) 		11.8
(-3) 		15
(-0.1) 		18.4
(3) 		16.9
(1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17404
Sequence Type Exemplar sequence
Representative Public ID F59D12.3 NCBI
Target Description F59D12.3 /REP_DB=WormBase Gene ID /WP=CE19908 /TR=Q9XUV6 /GB=CAB04541.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078178 NCBI Caenorhabditis elegans F59D12.3 (F59D12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000026823 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15648009:15650340:-1 11/11 None
F59D12.3 ENSEMBL cdna:known chromosome:CEL140:X:15648181:15651137:-1 gene:F59D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15648180-15651137(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59D12.3
Entrez Gene 186618 Entrez gene
SwissProt Q9XUV6 EMBL-EBI
WormBase CE19908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04541 Hypothetical protein F59D12.3 [Caenorhabditis elegans] ref|NP_510579.1| F59D12.3 [Caenorhabditis elegans] 0.0
blast CAE63349 Hypothetical protein CBG07751 [Caenorhabditis briggsae] 1.0E-121
blast CAE63349 Hypothetical protein CBG07751 [Caenorhabditis briggsae] 1.0E-120
blast CAA88098 Hypothetical protein C41C4.1 [Caenorhabditis elegans] ref|NP_495699.1| C41C4.1 [Caenorhabditis elegans] sp|Q09272|YQG1_CAEEL Hypothetical protein C41C4.1 in chromosome II 3.0E-36
blast CAA88098 Hypothetical protein C41C4.1 [Caenorhabditis elegans] ref|NP_495699.1| C41C4.1 [Caenorhabditis elegans] sp|Q09272|YQG1_CAEEL Hypothetical protein C41C4.1 in chromosome II 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180289_AT
aacgcatgcaaaccatattgccatgaacacaactttcaccacaaaacttgctattattcg
agatccagtggaaaggtttctttctgggtttgttgataaatgcatacatgaggcagaaaa
gaaagattaccggtgctatggctgcaataaagatatggtatgtgttttgaaagaacaata
tgagaggttcaagttgattgcggagggaagactacttagtttttcttacgaggatcggca
ttttgctcccatgtcttggttttgcgactttgacagtgaaacgatcaaaaactacaggtt
tctatttttcggggagactgaggagaaacaaagtcagacgatccgtgagctgatgaatat
attttctgttcatggagttgacaatggcacaatttcgcacatttttcaggagttatcagc
gaatcgaacaaaacatagcaccagcggatctgccattcgagaaaaaataggaaaggaaat
gcgtagtgatcctgaagcaatgcgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCATGCAAACCATATTGCCATG 540 145 510 Antisense
CACAACTTTCACCACAAAACTTGCT 218 193 537 Antisense
AAACTTGCTATTATTCGAGATCCAG 558 127 553 Antisense
GAAAGATTACCGGTGCTATGGCTGC 701 353 630 Antisense
TACGAGGATCGGCATTTTGCTCCCA 706 647 736 Antisense
TGCTCCCATGTCTTGGTTTTGCGAC 696 581 753 Antisense
ACAAAGTCAGACGATCCGTGAGCTG 331 111 837 Antisense
GGCACAATTTCGCACATTTTTCAGG 510 535 895 Antisense
AAACATAGCACCAGCGGATCTGCCA 44 129 940 Antisense
CCAGCGGATCTGCCATTCGAGAAAA 383 273 950 Antisense
GTAGTGATCCTGAAGCAATGCGTCT 602 455 992 Antisense
Sequence Source Affymetrix Proprietary Database