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[180288_at]

Description T06E4.10 /REP_DB=WormBase Gene ID /WP=CE06376 /TR=Q22264 /GB=CAA94796.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      6grp_total > 01      4grp_total > 56      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1991
1 2 3 4 range
A 12.9
(-3)
A 		661.7
(-0.7)
P 		1733.1
(3)
P 		3.6
(-3)
A 		1730
B 30.8
(-2.9)
A 		1351.8
(3)
P 		764.5
(0.4)
P 		9.8
(-3)
A 		1342
C 38.9
(-3)
A 		1069
(0.2)
P 		1994.3
(3)
P 		42.4
(-3)
A 		1955
avr 27.5
(-3) 		1027.5
(1.1) 		1497.3
(3) 		18.6
(-3) 		1479

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 303
(-2.2)
P 		519.9
(3)
P 		276.2
(-2.9)
P 		296
(-2.4)
P 		361.2
(-0.8)
P 		271
(-3)
P 		249
B 298.1
(-1.7)
P 		496.5
(3)
P 		264.9
(-2.5)
M 		339.2
(-0.7)
P 		319.7
(-1.2)
P 		243.1
(-3)
P 		253
C 214
(-3)
P 		453.3
(3)
P 		302.7
(-0.8)
P 		292.2
(-1)
P 		332.8
(-0)
P 		230.4
(-2.6)
P 		239
avr 271.7
(-2.4) 		489.9
(3) 		281.3
(-2.2) 		309.1
(-1.5) 		337.9
(-0.8) 		248.2
(-3) 		242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 695
1 2 3 4 range
A 4.7
(-2.9)
A 		143.6
(-1.1)
P 		453.1
(3)
P 		0.5
(-3)
A 		453
B 9.8
(-2.9)
A 		333.9
(3)
P 		177.2
(0.2)
P 		2.1
(-3)
A 		332
C 12.9
(-2.9)
A 		307.3
(-0.4)
P 		695.1
(3)
P 		7.1
(-3)
A 		688
avr 9.1
(-2.9) 		261.6
(0.5) 		441.8
(3) 		3.2
(-3) 		439

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 55.8
(-3)
P 		184.9
(3)
P 		60.2
(-2.8)
P 		75.1
(-2.1)
P 		109
(-0.5)
P 		66
(-2.5)
P 		129
B 103.7
(-0.7)
P 		165.3
(3)
P 		64.3
(-3)
M 		89.8
(-1.5)
P 		129.9
(0.9)
P 		90.7
(-1.4)
P 		101
C 79.3
(-1.5)
P 		138.3
(3)
P 		77
(-1.6)
P 		58.8
(-3)
P 		107.7
(0.7)
P 		77.1
(-1.6)
P 		80
avr 79.6
(-2.2) 		162.8
(3) 		67.2
(-3) 		74.6
(-2.5) 		115.5
(0) 		77.9
(-2.3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12296
Sequence Type Exemplar sequence
Representative Public ID T06E4.10 NCBI
Target Description T06E4.10 /REP_DB=WormBase Gene ID /WP=CE06376 /TR=Q22264 /GB=CAA94796.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073079 NCBI Caenorhabditis elegans T06E4.10 (T06E4.10) mRNA, complete cds. 11/11 None
GENEFINDER00000007458 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9620901:9621927:-1 11/11 None
T06E4.10 ENSEMBL cdna:known chromosome:CEL140:V:9620901:9621927:-1 gene:T06E4.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007435 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9620900-9621927(-) 73.07 100.0
Public Domain and Genome References
Gene Title
Ensembl T06E4.10
Entrez Gene 188180 Entrez gene
SwissProt Q22264 EMBL-EBI
WormBase CE06376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94796 Hypothetical protein T06E4.10 [Caenorhabditis elegans] ref|NP_505480.1| T06E4.10 [Caenorhabditis elegans] 4.0E-32
Sequence
Target Sequence 
>C. ELEGANS:180288_AT
aaagtaactgacacctttctggctcttcttcttcttctttctcttcaactgatcttttct
cgcggtaagctgaagaagaacgccgggcgcgcggaaagaaatatcttctgtgctttgttc
gctgtctctaccgctcaattggctgcctggccatccacttcttactcaccattctaccag
gcgttgttcggtggagccgctgctccagcagttgcagctgccccagcctttgctgctcca
gcttacgctccagctcttggagctccagcctacgccccagctcttgctgctccagcatat
gctccaggacttgcggcaccagcatttgctccagcaccagtcgtcgctgccgctccagct
ttggctccagcatatgcaccagctccagtcgttgccgctgctccagccttcgccccagct
tatgctccagctccagtcgcatccccaatgattgctgctgctccagcacttgctgctgct
tccatcaacggacttccagttgccgccgctccagcatttgctccagcttttgccccagca
gccgttccagccgcagttccagcctacgctccattccaaactgccgcttactggatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTAACTGACACCTTTCTGGCTC 502 121 70 Antisense
CTTCTTTCTCTTCAACTGATCTTTT 331 221 103 Antisense
TGATCTTTTCTCGCGGTAAGCTGAA 398 561 119 Antisense
GAACGCCGGGCGCGCGGAAAGAAAT 5 347 147 Antisense
AATATCTTCTGTGCTTTGTTCGCTG 687 173 169 Antisense
ACCATTCTACCAGGCGTTGTTCGGT 77 85 237 Antisense
TTACGCTCCAGCTCTTGGAGCTCCA 487 681 312 Antisense
AGCTCTTGCTGCTCCAGCATATGCT 161 79 348 Antisense
CAGCATATGCTCCAGGACTTGCGGC 44 203 362 Antisense
TCCATCAACGGACTTCCAGTTGCCG 336 589 550 Antisense
CCAAACTGCCGCTTACTGGATCGGA 68 277 645 Antisense
Sequence Source Affymetrix Proprietary Database