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[180287_at]

Description C04E6.3 /REP_DB=WormBase Gene ID /WP=CE07908 /TR=O01472 /GB=AAK39145.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 30.1
(0.4)
A 		7.7
(-3)
A 		32.3
(0.7)
A 		47.5
(3)
A 		40
B 21.8
(-1.1)
A 		27.7
(-0)
A 		11.4
(-3)
A 		44.3
(3)
A 		33
C 41.3
(3)
A 		25.7
(-0.8)
A 		16.6
(-3)
A 		41.2
(3)
A 		25
avr 31.1
(-0.3) 		20.4
(-2.9) 		20.1
(-3) 		44.3
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 4.6
(-3)
A 		7.6
(-2.3)
A 		27.6
(2)
A 		32.1
(3)
A 		31.3
(2.8)
A 		21.6
(0.7)
A 		28
B 4.8
(-2.3)
A 		24.9
(1.3)
A 		34.1
(3)
A 		1.6
(-2.9)
A 		27.1
(1.7)
A 		0.8
(-3)
A 		33
C 15.4
(0)
A 		23.7
(2.1)
A 		27.3
(3)
A 		15.4
(0)
A 		12
(-0.9)
A 		3.5
(-3)
A 		24
avr 8.3
(-3) 		18.7
(-0.1) 		29.7
(3) 		16.4
(-0.7) 		23.5
(1.3) 		8.6
(-2.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11
(3)
A 		1.7
(-3)
A 		8.4
(1.3)
A 		7
(0.4)
A 		9
B 7
(0.9)
A 		6.8
(0.7)
A 		2.6
(-3)
A 		9.4
(3)
A 		7
C 13.7
(3)
A 		7.4
(-1.8)
A 		5.8
(-3)
A 		6.9
(-2.2)
A 		8
avr 10.6
(3) 		5.3
(-3) 		5.6
(-2.7) 		7.8
(-0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.7
(-1.7)
A 		6
(0.6)
A 		8.1
(2)
A 		9.5
(3)
A 		5.3
(0.1)
A 		9
B 1.7
(-2.2)
A 		8.3
(1.5)
A 		8.3
(1.5)
A 		0.4
(-2.9)
A 		11
(3)
A 		0.3
(-3)
A 		11
C 5.7
(1.5)
A 		7.2
(3)
A 		7
(2.8)
A 		3.1
(-1.1)
A 		3.9
(-0.3)
A 		1.2
(-3)
A 		6
avr 2.7
(-2.6) 		6.1
(0.9) 		7.1
(2) 		3.9
(-1.3) 		8.1
(3) 		2.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11462
Sequence Type Exemplar sequence
Representative Public ID C04E6.3 NCBI
Target Description C04E6.3 /REP_DB=WormBase Gene ID /WP=CE07908 /TR=O01472 /GB=AAK39145.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072141
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C04E6.3 ENSEMBL cdna:known chromosome:CEL140:V:5922715:5922989:1 gene:C04E6.3 None
NM_072141 NCBI Caenorhabditis elegans C04E6.3 (C04E6.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5922714-5923330(+) 74.13 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E6.3
Entrez Gene 182201 Entrez gene
SwissProt O01472 EMBL-EBI
WormBase CE36782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39145 Hypothetical protein C04E6.3 [Caenorhabditis elegans] ref|NP_504542.2| C04E6.3 [Caenorhabditis elegans] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:180287_AT
atgtgcctcaaatgttatcagataagtgtactcactgtttttccaaatattgcccgtaaa
tctgagaacacattataccggaacgcccacaatttgagattttattttagggaaaaacac
ggagttaaagcctttaaaaatatttatttcagaggtaattacttcaaagtagcgccagta
gaaacagaaagaacaatgaccagatattatagtaaagaatttatagaaatgttcgaaaaa
aaatatagaaaaaaaaatttcaatgatattttgaaaattggaaatatcttaatttttgcc
accttttttggaagctgtaggggcgtgcggcaaatttgccgaattcgccgaattgactgt
tttccgagctcggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCCTCAAATGTTATCAGATAA 271 49 13 Antisense
AGTGTACTCACTGTTTTTCCAAATA 621 59 37 Antisense
CACTGTTTTTCCAAATATTGCCCGT 279 197 45 Antisense
TATTGCCCGTAAATCTGAGAACACA 1 665 60 Antisense
TGAGAACACATTATACCGGAACGCC 417 567 75 Antisense
ACCGGAACGCCCACAATTTGAGATT 664 35 89 Antisense
GAAATATCTTAATTTTTGCCACCTT 301 363 293 Antisense
TTTGCCACCTTTTTTGGAAGCTGTA 8 669 307 Antisense
AAGCTGTAGGGGCGTGCGGCAAATT 208 141 324 Antisense
GAATTCGCCGAATTGACTGTTTTCC 134 325 353 Antisense
ATTGACTGTTTTCCGAGCTCGGCAA 275 5 364 Antisense
Sequence Source Affymetrix Proprietary Database