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[180285_at]

Description F10G2.7 /REP_DB=WormBase Gene ID /WP=CE09334 /TR=Q22958 /GB=AAG24061.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 29.2
(-3)
M 		37.5
(-1.7)
A 		31.9
(-2.6)
A 		66.7
(3)
A 		38
B 44.8
(2.2)
P 		12.1
(-3)
A 		50.1
(3)
P 		36.5
(0.9)
A 		38
C 38.5
(2.5)
P 		10.5
(-3)
A 		41
(3)
P 		33
(1.4)
A 		31
avr 37.5
(1.1) 		20
(-3) 		41
(2) 		45.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 40.3
(0.7)
A 		23.8
(-1.3)
A 		59.4
(3)
P 		25.9
(-1)
A 		9.2
(-3)
A 		50.5
(1.9)
M 		50
B 23.8
(-0.7)
P 		48.2
(3)
P 		8.7
(-3)
A 		26
(-0.4)
A 		33.1
(0.7)
M 		25.1
(-0.5)
A 		40
C 32.6
(-0.5)
A 		51.8
(2.1)
A 		35.3
(-0.2)
A 		58.7
(3)
A 		14.2
(-3)
A 		22.5
(-1.9)
A 		45
avr 32.2
(0.6) 		41.3
(3) 		34.5
(1.2) 		36.9
(1.8) 		18.8
(-3) 		32.7
(0.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.6
(3)
M 		8.1
(-3)
A 		8.4
(-2.3)
A 		9.8
(1.1)
A 		3
B 14.3
(3)
P 		3
(-3)
A 		11.6
(1.6)
P 		7.8
(-0.5)
A 		11
C 12.7
(2.2)
P 		3
(-3)
A 		14.3
(3)
P 		5.6
(-1.6)
A 		11
avr 12.5
(3) 		4.7
(-3) 		11.4
(2.2) 		7.7
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.4
(-0.3)
A 		8.5
(0.4)
A 		12.9
(3)
P 		6.6
(-0.7)
A 		2.8
(-3)
A 		12.3
(2.6)
M 		10
B 8.3
(-0.3)
P 		16
(3)
P 		2.1
(-3)
A 		6.9
(-0.9)
A 		13.4
(1.9)
M 		9.4
(0.2)
A 		14
C 12.1
(1)
A 		15.8
(3)
A 		9
(-0.6)
A 		11.8
(0.9)
A 		4.6
(-3)
A 		7.5
(-1.4)
A 		11
avr 9.3
(-0.8) 		13.4
(3) 		8
(-2) 		8.4
(-1.6) 		6.9
(-3) 		9.7
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11460
Sequence Type Exemplar sequence
Representative Public ID F10G2.7 NCBI
Target Description F10G2.7 /REP_DB=WormBase Gene ID /WP=CE09334 /TR=Q22958 /GB=AAG24061.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072467 NCBI Caenorhabditis elegans F10G2.7 (F10G2.7) mRNA, complete cds. 11/11 None
F10G2.7 ENSEMBL cdna:known chromosome:CEL140:V:7336367:7339761:-1 gene:F10G2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010641 5/11 Cross Hyb Matching Probes None
GENEFINDER00000010643 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7336367-7339762(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10G2.7
Entrez Gene 184317 Entrez gene
SwissProt Q22958 EMBL-EBI
WormBase CE09334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504868 F10G2.7 [Caenorhabditis elegans] gb|AAG24061.1| Hypothetical protein F10G2.7 [Caenorhabditis elegans] 0.0
blast AAF39915 Hypothetical protein K08A2.2 [Caenorhabditis elegans] ref|NP_494418.1| K08A2.2 [Caenorhabditis elegans] 1.0E-109
blast CAE72442 Hypothetical protein CBG19612 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 1.0E-126
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 5.0E-101
Sequence
Target Sequence 
>C. ELEGANS:180285_AT
atggactgtaacattggcccgatctatgcagatgacccaaaagtggctcaggcaatgttt
gcagaaattcttaaaggaattaaagaatctggaaaagaagtttcaacttttgagatgcga
tcttcccagctgtgcacggacgcttttcattggttcactccgttcttgaaatgcaagcca
tcccgtgttcacctcccatcaactcaagttcttcataagccacaaagaatttcaagcttc
tcagactcagggctttctgatactccggtccgatcagttagtccatatgtggaaacattg
aatgaatatgacgacgatgaaattaaaaagatatttagacgagaaatgatgaccgttgaa
gtttggcaacttttctgcatttcaactgatttttcgaaattatttcccggcatttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACTGTAACATTGGCCCGATCT 216 53 1588 Antisense
TGGCCCGATCTATGCAGATGACCCA 237 545 1602 Antisense
AGATGACCCAAAAGTGGCTCAGGCA 667 67 1617 Antisense
CATTGGTTCACTCCGTTCTTGAAAT 628 213 1735 Antisense
TCTTGAAATGCAAGCCATCCCGTGT 296 613 1751 Antisense
CCTCCCATCAACTCAAGTTCTTCAT 437 267 1779 Antisense
ATTTCAAGCTTCTCAGACTCAGGGC 463 13 1816 Antisense
GACTCAGGGCTTTCTGATACTCCGG 532 373 1831 Antisense
GATACTCCGGTCCGATCAGTTAGTC 526 423 1846 Antisense
GGTCCGATCAGTTAGTCCATATGTG 299 501 1854 Antisense
TCGAAATTATTTCCCGGCATTTTTG 149 601 1981 Antisense
Sequence Source Affymetrix Proprietary Database