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[180282_at] 7TM chemoreceptor, srt family

Description ZC142.2 /REP_DB=WormBase Gene ID /WP=CE15056 /TR=Q23073 /GB=AAB04846.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 02      6grp_cgc > 60      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 15.5
(-3)
A 		20.4
(-2.6)
A 		26.3
(-2.1)
A 		85.6
(3)
A 		70
B 5.5
(-2.9)
A 		6
(-2.9)
A 		4.7
(-3)
A 		62.3
(3)
A 		58
C 23.7
(-2.1)
A 		8.5
(-3)
A 		20.2
(-2.3)
A 		115.2
(3)
A 		107
avr 14.9
(-2.7) 		11.6
(-3) 		17.1
(-2.6) 		87.7
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 65.4
(3)
A 		4.6
(-2.8)
A 		32.1
(-0.2)
A 		22.8
(-1.1)
A 		2.7
(-3)
A 		11.7
(-2.1)
A 		63
B 16.5
(-1.2)
A 		7.1
(-2.7)
A 		40.6
(2.5)
A 		44.1
(3)
A 		26.4
(0.3)
A 		4.9
(-3)
A 		39
C 13.5
(-3)
A 		43
(3)
A 		26.8
(-0.3)
A 		17.9
(-2.1)
A 		28.9
(0.1)
A 		19
(-1.9)
A 		30
avr 31.8
(2.6) 		18.2
(-1.2) 		33.2
(3) 		28.3
(1.6) 		19.3
(-0.9) 		11.9
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.6
(-2.1)
A 		4.4
(-3)
A 		6.9
(-1.1)
A 		12.5
(3)
A 		8
B 1.8
(-2.7)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		13.3
(3)
A 		12
C 7.9
(-1.1)
A 		2.4
(-3)
A 		7
(-1.4)
A 		19.4
(3)
A 		17
avr 5.1
(-1.9) 		2.8
(-3) 		5
(-1.9) 		15.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.1
(3)
A 		1.6
(-2.6)
A 		7
(0.3)
A 		5.8
(-0.3)
A 		0.8
(-3)
A 		2.8
(-1.9)
A 		11
B 5.7
(-0.6)
A 		2.4
(-2.6)
A 		9.8
(1.8)
A 		11.7
(3)
A 		10.7
(2.4)
A 		1.8
(-3)
A 		10
C 5
(-2.1)
A 		13.1
(3)
A 		6.8
(-1)
A 		3.6
(-3)
A 		9.3
(0.6)
A 		6.3
(-1.3)
A 		10
avr 7.6
(2.6) 		5.7
(-0.1) 		7.9
(3) 		7
(1.7) 		6.9
(1.6) 		3.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15935
Sequence Type Exemplar sequence
Representative Public ID ZC142.2 NCBI
Target Description ZC142.2 /REP_DB=WormBase Gene ID /WP=CE15056 /TR=Q23073 /GB=AAB04846.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071773(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071773 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-14) (srt-14) mRNA, complete cds. 11/11 None
GENEFINDER00000009473 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4253316:4255344:-1 11/11 None
ZC142.2 ENSEMBL cdna:known chromosome:CEL140:V:4253316:4256388:-1 gene:ZC142.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4253315-4256367(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-14
Ensembl ZC142.2
Entrez Gene 191088 Entrez gene
SwissProt Q23073 EMBL-EBI
WormBase CE37945 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04846 Serpentine receptor, class t protein 14 [Caenorhabditis elegans] ref|NP_504174.2| Serpentine Receptor, class T family member (srt-14) [Caenorhabditis elegans] 0.0
blast AAB04845 Serpentine receptor, class t protein 13 [Caenorhabditis elegans] ref|NP_504173.2| Serpentine Receptor, class T family member (srt-13) [Caenorhabditis elegans] 1.0E-142
blast AAB04846 Serpentine receptor, class t protein 14 [Caenorhabditis elegans] ref|NP_504174.2| Serpentine Receptor, class T family member (srt-14) [Caenorhabditis elegans] 1.0E-130
blast CAE58312 Hypothetical protein CBG01422 [Caenorhabditis briggsae] 1.0E-125
blast AAB04845 Serpentine receptor, class t protein 13 [Caenorhabditis elegans] ref|NP_504173.2| Serpentine Receptor, class T family member (srt-13) [Caenorhabditis elegans] 2.0E-95
blast CAE58312 Hypothetical protein CBG01422 [Caenorhabditis briggsae] 1.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 4.5E-97
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504174.2 7 20-42,55-77,87-109,134-156,185-207,220-242,252-274
ZC142.2 7 20-42,55-77,87-109,134-156,185-207,220-242,252-274
GENEFINDER00000009473 4 80-102,131-153,166-188,198-220
Sequence
Target Sequence 
>C. ELEGANS:180282_AT
ggcattgtctatttacgtaacctttttcaccaatccggttctcttcactgccaagtataa
ctcttggtttttcgatccaaacattgggaaagaggcaaacttgtattataacattcctca
gacaattaataatctgttagtggctttactgtcaacagctctatacatttatttgtgtta
tcacttgattttcaagtttgggtacactacgtcaatgtggatgtataaaacaaaacagca
gatcataatccaagcagtaatcctttgctcttttcatgctattgctgcatacatttacgt
gtacatgcaattcttcccatcgccaccatggctcattataattggccaaattgcgtggca
atggagtaatggatgtgtttgtattgtatactggactcttaacagaactgttagaaatgc
tgccattagaatgatgcttccgagaagtatccgagaaaagtatggtcttgctatgggaat
tgatgagcaaatagcaatggaacggagggatgaatcaacgaatccgaaaaatgttgggac
agctatttcagctgcagtcaacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTGTCTATTTACGTAACCTTT 380 537 411 Antisense
TCTCTTCACTGCCAAGTATAACTCT 146 613 450 Antisense
GTGGCTTTACTGTCAACAGCTCTAT 202 491 550 Antisense
AAGTTTGGGTACACTACGTCAATGT 53 1 604 Antisense
CAGTAATCCTTTGCTCTTTTCATGC 687 205 665 Antisense
TTTGCTCTTTTCATGCTATTGCTGC 129 669 674 Antisense
GCTATTGCTGCATACATTTACGTGT 308 303 688 Antisense
CCATCGCCACCATGGCTCATTATAA 675 271 727 Antisense
GCTGCCATTAGAATGATGCTTCCGA 16 299 829 Antisense
GTATGGTCTTGCTATGGGAATTGAT 379 455 870 Antisense
AGCTATTTCAGCTGCAGTCAACAGT 460 77 951 Antisense
Sequence Source Affymetrix Proprietary Database