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[180281_s_at]

Description B0244.9 /REP_DB=WormBase Gene ID /WP=CE01756 /TR=Q09968 /GB=AAA68377.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 45.6
(2)
A 		52.6
(3)
A 		9.4
(-3)
A 		23.9
(-1)
A 		43
B 12.7
(-2.4)
A 		12.2
(-2.5)
A 		8.8
(-3)
A 		50.4
(3)
A 		42
C 47.6
(1)
A 		2.4
(-3)
A 		33.9
(-0.2)
A 		69.4
(3)
A 		67
avr 35.3
(0.5) 		22.4
(-2) 		17.4
(-3) 		47.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 50.3
(-1.5)
A 		6.2
(-3)
A 		20.1
(-2.5)
A 		28.8
(-2.3)
A 		98.6
(0.1)
P 		187.9
(3)
P 		182
B 16.3
(-2.7)
A 		10.2
(-3)
A 		22.2
(-2.4)
A 		47.9
(-1.2)
A 		118.6
(2.2)
P 		135.8
(3)
P 		126
C 25.1
(-2.2)
A 		24
(-2.2)
A 		7.6
(-3)
A 		69
(-0.1)
A 		96.4
(1.2)
P 		133.2
(3)
P 		126
avr 30.6
(-2.3) 		13.5
(-3) 		16.6
(-2.9) 		48.6
(-1.5) 		104.5
(0.9) 		152.3
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.6
(3)
A 		11.4
(0.8)
A 		2.5
(-3)
A 		3.5
(-2.6)
A 		14
B 4
(-1.6)
A 		3
(-2.3)
A 		2
(-3)
A 		10.7
(3)
A 		9
C 15.7
(3)
A 		0.7
(-3)
A 		11.8
(1.4)
A 		11.7
(1.4)
A 		15
avr 12.1
(3) 		5
(-3) 		5.4
(-2.7) 		8.6
(0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 9.3
(-2)
A 		2.2
(-3)
A 		4.4
(-2.7)
A 		7.3
(-2.3)
A 		29.8
(0.8)
P 		45.8
(3)
P 		44
B 5.7
(-2.7)
A 		3.4
(-3)
A 		5.4
(-2.7)
A 		12.7
(-1.8)
A 		48.2
(2.7)
P 		50.6
(3)
P 		47
C 9.3
(-2)
A 		7.3
(-2.2)
A 		1.9
(-3)
A 		13.9
(-1.3)
A 		31.2
(1.1)
P 		44.6
(3)
P 		43
avr 8.1
(-2.4) 		4.3
(-2.9) 		3.9
(-3) 		11.3
(-2) 		36.4
(1.5) 		47
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180281_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7364
Sequence Type Exemplar sequence
Representative Public ID B0244.9 NCBI
Target Description B0244.9 /REP_DB=WormBase Gene ID /WP=CE01756 /TR=Q09968 /GB=AAA68377.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065837(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065837 NCBI Caenorhabditis elegans B0244.9 (B0244.9) mRNA, complete cds. 11/11 None
SNAP00000015989 ENSEMBL cdna:SNAP chromosome:CEL140:III:5730117:5730940:-1 10/11 None
GENEFINDER00000015999 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5730117:5730940:-1 11/11 None
B0244.9 ENSEMBL cdna:known chromosome:CEL140:III:5730081:5730959:-1 gene:B0244.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5730115-5730939(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0244.9
Entrez Gene 175805 Entrez gene
SwissProt Q09968 EMBL-EBI
WormBase CE01756 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68377 Hypothetical protein B0244.9 [Caenorhabditis elegans] ref|NP_498238.1| B0244.9 [Caenorhabditis elegans] 1.0E-103
blast AAA68377 Hypothetical protein B0244.9 [Caenorhabditis elegans] ref|NP_498238.1| B0244.9 [Caenorhabditis elegans] 1.0E-101
blast CAE73640 Hypothetical protein CBG21140 [Caenorhabditis briggsae] 2.0E-19
blast CAE73640 Hypothetical protein CBG21140 [Caenorhabditis briggsae] 4.0E-19
blast CAE64328 Hypothetical protein CBG09008 [Caenorhabditis briggsae] 1.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498238.1 4 51-70,75-97,107-126,147-169
B0244.9 4 51-70,75-97,107-126,147-169
SNAP00000015989 4 51-70,77-94,109-131,152-174
GENEFINDER00000015999 4 51-70,75-97,107-126,147-169
Sequence
Target Sequence 
>C. ELEGANS:180281_S_AT
gaatccagacagttgtgcatccgtggatttggaatacgtgcatgtggaggatgaaaatcc
gaatgagaatgagccggcacgtttgagagctggattcgagtgggctgctgaaccggatga
gattctcattgcaggtgttcccaccaagttcattatgtttggtttgtcgtgtttccttgt
aattctaacactcagtctatggattgccagcacccattattcttactttatctggctcgt
gtttgccacgttgtacatgggtcttatcgtgttccttcccgaatatttctcgaatataat
cagttttgctctgaactttatttactggatcgcttactgtattttcacttttattggaat
tattcttgatgttgttaggagaggggacagttgtagttccggtatgagcaaggaagtttg
tgatgctaatcgtcacggatacatgttggctatatgcttcggatgtgctgatctgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCAGACAGTTGTGCATCCGTG 281 331 15 Antisense
GCCGGCACGTTTGAGAGCTGGATTC 454 283 87 Antisense
TGGATTCGAGTGGGCTGCTGAACCG 378 551 105 Antisense
TGAGATTCTCATTGCAGGTGTTCCC 25 569 132 Antisense
GTTTGTCGTGTTTCCTTGTAATTCT 481 451 176 Antisense
AACACTCAGTCTATGGATTGCCAGC 632 135 201 Antisense
AGCACCCATTATTCTTACTTTATCT 403 77 223 Antisense
TACATGGGTCTTATCGTGTTCCTTC 182 645 268 Antisense
GTTCCTTCCCGAATATTTCTCGAAT 270 441 285 Antisense
GGATCGCTTACTGTATTTTCACTTT 249 513 341 Antisense
ATGCTTCGGATGTGCTGATCTGCTA 437 43 468 Antisense
Sequence Source Affymetrix Proprietary Database