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[180279_at]

Description M02B7.2 /REP_DB=WormBase Gene ID /WP=CE12322 /TR=Q94285 /GB=AAB09126.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 59.4
(-3)
A 		92.1
(-1)
A 		159.2
(3)
A 		126.8
(1.1)
A 		100
B 108
(2)
A 		74.4
(-3)
A 		114.7
(3)
A 		106.3
(1.7)
A 		40
C 131.7
(3)
A 		42.1
(-3)
A 		107.8
(1.4)
A 		131.5
(3)
A 		90
avr 99.7
(0.1) 		69.5
(-3) 		127.2
(3) 		121.5
(2.4) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 61
(-2.7)
A 		103.2
(0.2)
A 		87.7
(-0.9)
A 		125.2
(1.7)
A 		57.4
(-3)
A 		143.4
(3)
A 		86
B 23.3
(-3)
A 		66.6
(-1.2)
A 		108
(0.5)
A 		116.1
(0.8)
A 		118.4
(0.9)
A 		168
(3)
A 		145
C 71
(-3)
A 		113.4
(0.1)
A 		151.8
(3)
A 		102.7
(-0.6)
A 		107.1
(-0.3)
A 		129.5
(1.3)
A 		81
avr 51.8
(-3) 		94.4
(-0.3) 		115.8
(1) 		114.7
(1) 		94.3
(-0.3) 		147
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 21.6
(-2.2)
A 		20
(-2.6)
A 		41.6
(3)
A 		18.6
(-3)
A 		23
B 34.5
(3)
A 		18.4
(-3)
A 		26.6
(0.1)
A 		22.6
(-1.4)
A 		16
C 43.6
(3)
A 		12.1
(-3)
A 		37.6
(1.9)
A 		22.2
(-1.1)
A 		32
avr 33.2
(2.3) 		16.8
(-3) 		35.3
(3) 		21.1
(-1.6) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 11.2
(-3)
A 		36.7
(3)
A 		19.1
(-1.1)
A 		31.7
(1.8)
A 		17.3
(-1.6)
A 		34.9
(2.6)
A 		26
B 8.1
(-3)
A 		22.2
(-1.5)
A 		26.2
(-1)
A 		30.8
(-0.5)
A 		48.1
(1.4)
A 		62.7
(3)
A 		55
C 26.3
(-1.5)
A 		34.6
(0.7)
A 		38.6
(1.8)
A 		20.7
(-3)
A 		34.7
(0.7)
A 		43.3
(3)
A 		23
avr 15.2
(-3) 		31.2
(0) 		28
(-0.6) 		27.7
(-0.6) 		33.4
(0.4) 		47
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10491
Sequence Type Exemplar sequence
Representative Public ID M02B7.2 NCBI
Target Description M02B7.2 /REP_DB=WormBase Gene ID /WP=CE12322 /TR=Q94285 /GB=AAB09126.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068017 NCBI Caenorhabditis elegans M02B7.2 (M02B7.2) mRNA, complete cds. 11/11 None
SNAP00000028169 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3800714:3804777:1 11/11 None
GENEFINDER00000028176 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3803584:3804777:1 11/11 None
M02B7.2 ENSEMBL cdna:known chromosome:CEL140:IV:3803584:3804777:1 gene:M02B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3803589-3804783(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B7.2
Entrez Gene 187397 Entrez gene
SwissProt Q94285 EMBL-EBI
WormBase CE12322 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256858_AT exonuclease family protein at
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4527 exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09126 Hypothetical protein M02B7.2 [Caenorhabditis elegans] ref|NP_500418.1| M02B7.2 [Caenorhabditis elegans] 1.0E-155
blast AAB09126 Hypothetical protein M02B7.2 [Caenorhabditis elegans] ref|NP_500418.1| M02B7.2 [Caenorhabditis elegans] 1.0E-145
blast AAB09126 Hypothetical protein M02B7.2 [Caenorhabditis elegans] ref|NP_500418.1| M02B7.2 [Caenorhabditis elegans] 1.0E-144
blast AAB94148 Hypothetical protein R02D3.8 [Caenorhabditis elegans] ref|NP_499887.1| R02D3.8 [Caenorhabditis elegans] 1.0E-141
blast AAB94148 Hypothetical protein R02D3.8 [Caenorhabditis elegans] ref|NP_499887.1| R02D3.8 [Caenorhabditis elegans] 1.0E-132
blast AAB94148 Hypothetical protein R02D3.8 [Caenorhabditis elegans] ref|NP_499887.1| R02D3.8 [Caenorhabditis elegans] 1.0E-131
blast CAE65673 Hypothetical protein CBG10739 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR006055 EMBL-EBI Exonuclease 1.7E-46
Pfam IPR006055 EMBL-EBI Exonuclease 5.3E-39
Pfam IPR006055 EMBL-EBI Exonuclease 1.1E-29
Pfam IPR006055 EMBL-EBI Exonuclease 1.5E-6
Sequence
Target Sequence 
>C. ELEGANS:180279_AT
gtattagactttgaggccacgtgccaagataactggaagggaccaatgcacccggttcaa
gaaatcatcgaattcccagtggtccagctctcgacggcggattggagcgaaattcgccgt
tttcatcaatacataaagccgacggaatttccaaggctcacatctttctgcacatcttta
acgagaattattcaggaaatggttgacgaaaaaccgaagcttccagaagttttatcggaa
tttgatagctggctgaaagaggattctcggttgaaacagggaaattttgcatttgttact
tgtggagactgggatctgaaagtcgcgctgccgagtgaggcgaaatttaagaatatcgaa
attccagagtacttcaatcaatggatcaacgtgaaaaaggcgtacgcggagcacacaaat
catttcgcgaaaggaatgactcagctcctagccatctacaagctacaacatcagggccgc
ctccacagtggaatcgatgacgtggcaaatatctgcgaaattgttcggtgtttgggcagg
gacgggcacaattatcgaatcacaggctccaaggacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTAGACTTTGAGGCCACGTGCC 76 447 199 Antisense
TGGAAGGGACCAATGCACCCGGTTC 418 545 232 Antisense
CTCTCGACGGCGGATTGGAGCGAAA 598 231 286 Antisense
GGAGCGAAATTCGCCGTTTTCATCA 205 509 302 Antisense
AAAGGCGTACGCGGAGCACACAAAT 513 121 594 Antisense
TCAGCTCCTAGCCATCTACAAGCTA 493 623 639 Antisense
CTACAAGCTACAACATCAGGGCCGC 308 225 654 Antisense
GGCCGCCTCCACAGTGGAATCGATG 20 543 673 Antisense
TTCGGTGTTTGGGCAGGGACGGGCA 153 655 722 Antisense
GGGACGGGCACAATTATCGAATCAC 276 495 737 Antisense
ATCGAATCACAGGCTCCAAGGACAC 563 33 752 Antisense
Sequence Source Affymetrix Proprietary Database