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[180278_s_at]

Description F13D12.5 /REP_DB=WormBase Gene ID /WP=CE02184 /TR=Q19393 /GB=CAA88945.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 6.3
(-3)
A 		48.9
(-0.6)
A 		87.6
(1.5)
A 		113.9
(3)
P 		108
B 21.7
(-3)
A 		52.6
(-1.4)
A 		117.1
(1.8)
A 		140.3
(3)
A 		119
C 50.6
(-2.9)
A 		48.6
(-3)
A 		86
(-0.6)
P 		142.5
(3)
A 		94
avr 26.2
(-3) 		50
(-1.7) 		96.9
(1) 		132.2
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 4.7
(-3)
A 		9.4
(-2.9)
A 		10.2
(-2.9)
A 		91.1
(-1.5)
P 		196
(0.3)
P 		351.1
(3)
P 		346
B 8.3
(-2.9)
A 		5.6
(-3)
A 		40.7
(-2.2)
A 		82.3
(-1.3)
M 		185.3
(1)
P 		272.1
(3)
P 		267
C 40.6
(-2.2)
A 		13.1
(-3)
A 		26.5
(-2.6)
A 		109.7
(-0.3)
A 		177.6
(1.6)
P 		227.9
(3)
P 		215
avr 17.9
(-2.8) 		9.4
(-3) 		25.8
(-2.6) 		94.4
(-1.1) 		186.3
(0.9) 		283.7
(3) 		274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 2.3
(-3)
A 		10.6
(-0.6)
A 		22.9
(3)
A 		16.7
(1.2)
P 		21
B 6.9
(-3)
A 		13
(-1.4)
A 		27.1
(2.3)
A 		29.9
(3)
A 		23
C 16.8
(-2)
A 		14
(-3)
A 		30
(3)
P 		24
(0.8)
A 		16
avr 8.7
(-3) 		12.5
(-1.7) 		26.7
(3) 		23.5
(1.9) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.4
(-2.8)
A 		2.2
(-2.9)
A 		23.1
(-1.4)
P 		59.2
(1.1)
P 		85.5
(3)
P 		85
B 2.9
(-2.9)
A 		1.9
(-3)
A 		9.9
(-2.5)
A 		21.8
(-1.8)
M 		75.3
(1.4)
P 		101.5
(3)
P 		100
C 15
(-2.1)
A 		4
(-3)
A 		6.8
(-2.8)
A 		22.1
(-1.5)
A 		57.5
(1.4)
P 		76.3
(3)
P 		72
avr 6.3
(-2.8) 		3.1
(-3) 		6.3
(-2.8) 		22.3
(-1.6) 		64
(1.3) 		87.8
(3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180278_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2610
Sequence Type Exemplar sequence
Representative Public ID F13D12.5 NCBI
Target Description F13D12.5 /REP_DB=WormBase Gene ID /WP=CE02184 /TR=Q19393 /GB=CAA88945.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064103 NCBI Caenorhabditis elegans F13D12.5 (F13D12.5) mRNA, complete cds. 11/11 None
SNAP00000015029 ENSEMBL cdna:SNAP chromosome:CEL140:II:11726722:11728231:1 11/11 None
GENEFINDER00000015053 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11726722:11728231:1 11/11 None
F13D12.5 ENSEMBL cdna:known chromosome:CEL140:II:11726722:11728231:1 gene:F13D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11726718-11728228(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13D12.5
Entrez Gene 174799 Entrez gene
SwissProt Q19393 EMBL-EBI
WormBase CE02184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88945 Hypothetical protein F13D12.5 [Caenorhabditis elegans] ref|NP_496504.1| F13D12.5 [Caenorhabditis elegans] 0.0
blast CAA92694 Hypothetical protein T21B10.4 [Caenorhabditis elegans] ref|NP_495903.1| T21B10.4 [Caenorhabditis elegans] 7.0E-69
blast CAE59765 Hypothetical protein CBG03217 [Caenorhabditis briggsae] 1.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496504.1 1 351-373
F13D12.5 1 351-373
SNAP00000015029 1 351-373
GENEFINDER00000015053 1 351-373
Sequence
Target Sequence 
>C. ELEGANS:180278_S_AT
gatgtcgtgccgattatcaccggaaaaatggctggacgacgaatcgaaaattccttgttg
agcggcgaactccaaggtgtctcgaacggagtattctacgagacgagtgtgagagatgtc
aacgaaacgcatcagaccctgtcctcaacgctgacaacactcgattcggaatggagtatc
acttgtaacgcggagacgatttacagtgttgttccgaagaccaacaagctcctcatcatc
agggccaacgattattgcatgttgagagatggaaagaattacaacaaggagagctgtgaa
aacgagcaggcagactacctggctcgcaataatccgtctgagaccgacagcaatgtgaac
gcgatgatgtggctgatcgtgttctgcgtcgtcttaatccttctcgtgattctccagtgc
gtctacatcttttggctccgatcgtcctttgtctcggctgacgaggcctctcatcatcag
gatcaggagactgaagcctccatcttcatcgcgaaacagcgcagcttcccagcgagtttc
catgagccagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCGTGCCGATTATCACCGGAA 389 403 694 Antisense
ATTCCTTGTTGAGCGGCGAACTCCA 564 7 743 Antisense
GCGAACTCCAAGGTGTCTCGAACGG 165 283 758 Antisense
AACGCTGACAACACTCGATTCGGAA 469 145 840 Antisense
GGAGTATCACTTGTAACGCGGAGAC 15 517 866 Antisense
TCCTCATCATCAGGGCCAACGATTA 329 593 923 Antisense
CGAGCAGGCAGACTACCTGGCTCGC 101 251 996 Antisense
ATGATGTGGCTGATCGTGTTCTGCG 18 47 1057 Antisense
CCAGTGCGTCTACATCTTTTGGCTC 26 273 1107 Antisense
AGGAGACTGAAGCCTCCATCTTCAT 704 55 1178 Antisense
CCCAGCGAGTTTCCATGAGCCAGGA 183 259 1221 Antisense
Sequence Source Affymetrix Proprietary Database