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[180277_at]

Description T22D1.1 /REP_DB=WormBase Gene ID /WP=CE17245 /TR=Q9GZH0 /GB=AAF98634.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 29.8
(1.4)
A 		17
(-3)
A 		34.5
(3)
A 		24.4
(-0.5)
A 		18
B 15.6
(-0.8)
A 		33.2
(2.3)
A 		37.4
(3)
A 		3.2
(-3)
A 		34
C 29
(0.8)
M 		38.2
(3)
A 		13
(-3)
A 		35.3
(2.3)
A 		25
avr 24.8
(-0.3) 		29.5
(3) 		28.3
(2.2) 		21
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 31.1
(2.5)
A 		29.5
(2.2)
P 		16.6
(-0.4)
A 		33.4
(3)
A 		20.4
(0.4)
A 		3.9
(-3)
A 		30
B 2.9
(-3)
A 		34.1
(0.5)
M 		56.6
(3)
A 		7.3
(-2.5)
A 		19.1
(-1.2)
A 		12.3
(-1.9)
A 		54
C 29.9
(0.2)
A 		22
(-0.9)
A 		26.6
(-0.2)
A 		50.7
(3)
A 		30.8
(0.3)
A 		6.2
(-3)
A 		45
avr 21.3
(0.2) 		28.5
(1.9) 		33.3
(3) 		30.5
(2.3) 		23.4
(0.7) 		7.5
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.8
(3)
A 		3.7
(-2.9)
A 		9
(1.5)
A 		3.6
(-3)
A 		7
B 5
(0.2)
A 		8.2
(2.6)
A 		8.7
(3)
A 		0.7
(-3)
A 		8
C 9.6
(1.7)
M 		11
(3)
A 		4.5
(-3)
A 		5.9
(-1.7)
A 		7
avr 8.5
(3) 		7.6
(1.9) 		7.4
(1.7) 		3.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.7
(-0)
A 		10.5
(3)
P 		3.6
(-1.4)
A 		8.5
(1.7)
A 		6.2
(0.3)
A 		1
(-3)
A 		10
B 1
(-3)
A 		11.3
(1.8)
M 		13.8
(3)
A 		1.9
(-2.6)
A 		7.8
(0.2)
A 		4.6
(-1.3)
A 		13
C 11.1
(3)
A 		6.7
(0.1)
A 		6.8
(0.1)
A 		10.2
(2.4)
A 		10
(2.3)
A 		2.1
(-3)
A 		9
avr 5.9
(-0.1) 		9.5
(3) 		8.1
(1.8) 		6.9
(0.7) 		8
(1.7) 		2.6
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9080
Sequence Type Exemplar sequence
Representative Public ID T22D1.1 NCBI
Target Description T22D1.1 /REP_DB=WormBase Gene ID /WP=CE17245 /TR=Q9GZH0 /GB=AAF98634.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068668 NCBI Caenorhabditis elegans T22D1.1 (T22D1.1) mRNA, complete cds. 11/11 None
SNAP00000024016 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6923354:6925391:1 9/11 None
GENEFINDER00000024020 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6923354:6925391:1 9/11 None
T22D1.1 ENSEMBL cdna:known chromosome:CEL140:IV:6923354:6925557:1 gene:T22D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6923359-6925563(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22D1.1
Entrez Gene 188738 Entrez gene
SwissProt Q9GZH0 EMBL-EBI
WormBase CE17245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98634 Hypothetical protein T22D1.1 [Caenorhabditis elegans] ref|NP_501069.1| T22D1.1 [Caenorhabditis elegans] 0.0
blast CAE61768 Hypothetical protein CBG05728 [Caenorhabditis briggsae] 0.0
blast AAY43981 Hypothetical protein ZK381.8 [Caenorhabditis elegans] ref|NP_001023614.1| ZK381.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024020 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180277_AT
aaccagaaacctacaatcacacgtggattcattacagttggcatgaagatccaaatacga
ggcataatgtcagtttccctcatcttgttcatgttcaacgaccactccagaaaaatggtc
ataacaatatcacacatctctggaaaatggaatttgaaccattaaacgaaacaatcagag
aagaagatattaaagcgattgaatatgatttttggagaatgcggaatcaatctcgagtcg
ttgaaatttcaaaacgacttccaagtgaagatttttatttgccaattgtattcaaatgtt
attatgattcattctatggtttcatatttgataacaaacgtcgaaaaggtccaatgcaat
gcccgaatgcagatctttgtgaattaccacaaagagaagaatatcgttgtgtacattcag
atgctgaatattattcaggaccccatatggaaccatttacatttcatttctcgagtaatt
cattttggactaaagacatcggatgttatcaagtgcatcattttttgccacaagaaacgt
gttttttgggtgtacgccattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAGAAACCTACAATCACACGTG 395 147 1031 Antisense
CACACGTGGATTCATTACAGTTGGC 412 195 1048 Antisense
CATAATGTCAGTTTCCCTCATCTTG 517 213 1093 Antisense
TGTTCAACGACCACTCCAGAAAAAT 14 561 1122 Antisense
ATAACAATATCACACATCTCTGGAA 460 25 1151 Antisense
GAATGCGGAATCAATCTCGAGTCGT 345 331 1247 Antisense
GAAAAGGTCCAATGCAATGCCCGAA 442 353 1373 Antisense
ATTCAGGACCCCATATGGAACCATT 582 11 1463 Antisense
TACATTTCATTTCTCGAGTAATTCA 158 645 1488 Antisense
TCAAGTGCATCATTTTTTGCCACAA 297 633 1539 Antisense
GTGTTTTTTGGGTGTACGCCATTGC 592 447 1569 Antisense
Sequence Source Affymetrix Proprietary Database