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[180276_at]

Description F40G12.2 /REP_DB=WormBase Gene ID /WP=CE10178 /TR=Q20247 /GB=CAB01184.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 18.1
(3)
A 		6.9
(-2.9)
A 		14.7
(1.2)
A 		6.8
(-3)
A 		11
B 24.7
(-3)
A 		47.5
(0.8)
A 		60.9
(3)
A 		49.6
(1.1)
A 		36
C 48.5
(-2.8)
A 		55.2
(-2.1)
A 		47.1
(-3)
A 		101.8
(3)
A 		55
avr 30.4
(-3) 		36.5
(-1.4) 		40.9
(-0.2) 		52.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 22.9
(-0.5)
A 		47.3
(2.5)
A 		26.6
(-0.1)
A 		2.6
(-3)
A 		51.5
(3)
A 		7
(-2.5)
A 		49
B 2.3
(-3)
A 		46.6
(3)
A 		28.7
(0.6)
A 		12.4
(-1.6)
A 		45.7
(2.9)
A 		3.5
(-2.8)
A 		44
C 13.5
(-2.9)
A 		64.9
(3)
A 		12.9
(-3)
A 		58.9
(2.3)
A 		14.5
(-2.8)
A 		29.7
(-1.1)
A 		52
avr 12.9
(-3) 		52.9
(3) 		22.7
(-1.5) 		24.6
(-1.2) 		37.2
(0.6) 		13.4
(-2.9) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.6
(3)
A 		1.5
(-2.5)
A 		3.8
(-0)
A 		1
(-3)
A 		6
B 7.9
(-3)
A 		11.7
(0.7)
A 		14.1
(3)
A 		10.6
(-0.4)
A 		6
C 16
(-2.5)
A 		15.9
(-3)
A 		16.4
(-0.7)
A 		17.2
(3)
A 		1
avr 10.2
(-1) 		9.7
(-2.7) 		11.4
(3) 		9.6
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.2
(-1.7)
A 		16.8
(3)
A 		5.8
(-1.1)
A 		0.7
(-3)
A 		15.5
(2.5)
A 		1.7
(-2.6)
A 		16
B 0.8
(-3)
A 		15.5
(2)
A 		7
(-0.9)
A 		3.3
(-2.2)
A 		18.6
(3)
A 		1.3
(-2.8)
A 		18
C 5
(-2.4)
A 		19.8
(3)
A 		3.3
(-3)
A 		11.8
(0.1)
A 		4.7
(-2.5)
A 		10
(-0.6)
A 		17
avr 3.3
(-3) 		17.4
(3) 		5.4
(-2.1) 		5.3
(-2.1) 		12.9
(1.1) 		4.3
(-2.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14563
Sequence Type Exemplar sequence
Representative Public ID F40G12.2 NCBI
Target Description F40G12.2 /REP_DB=WormBase Gene ID /WP=CE10178 /TR=Q20247 /GB=CAB01184.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074128
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F40G12.2 ENSEMBL cdna:known chromosome:CEL140:V:14262132:14263519:-1 gene:F40G12.2 None
SNAP00000026727 ENSEMBL cdna:SNAP chromosome:CEL140:V:14262428:14263519:-1 None
GENEFINDER00000026754 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14262299:14263519:-1 None
NM_074128 NCBI Caenorhabditis elegans F40G12.2 (F40G12.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14262131-14263519(-) 99.82 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G12.2
Entrez Gene 185562 Entrez gene
SwissProt Q20247 EMBL-EBI
WormBase CE37970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01184 Hypothetical protein F40G12.2 [Caenorhabditis elegans] ref|NP_506529.2| F40G12.2 [Caenorhabditis elegans] 1.0E-151
blast CAB01184 Hypothetical protein F40G12.2 [Caenorhabditis elegans] ref|NP_506529.2| F40G12.2 [Caenorhabditis elegans] 1.0E-103
blast CAB01184 Hypothetical protein F40G12.2 [Caenorhabditis elegans] ref|NP_506529.2| F40G12.2 [Caenorhabditis elegans] 1.0E-102
blast CAE60982 Hypothetical protein CBG04717 [Caenorhabditis briggsae] 1.0E-29
blast CAE60982 Hypothetical protein CBG04717 [Caenorhabditis briggsae] 3.0E-29
blast CAE60982 Hypothetical protein CBG04717 [Caenorhabditis briggsae] 3.0E-22
blast AAA98576 Hypothetical protein C12D5.10 [Caenorhabditis elegans] ref|NP_504992.2| C12D5.10 [Caenorhabditis elegans] 4.0E-16
blast AAA98576 Hypothetical protein C12D5.10 [Caenorhabditis elegans] ref|NP_504992.2| C12D5.10 [Caenorhabditis elegans] 5.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.6E-14
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-47
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506529.2 1 7-29
F40G12.2 1 7-29
SNAP00000026727 1 7-29
GENEFINDER00000026754 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180276_AT
gcaattttcctaactgtatggctcaattttataaaattgttcaagatatgaatatgtata
attgcactggccaatttgaattcatgtcgaaagacccttttcttcgaaatcatgcatatt
ttcacggaaaatcatgtttcatgacatttcttcgagacttttgtagtacagaagtaattg
gatatcttcatacctattatgagtactttctggaattggctctaattccgtcagtgctag
agtgtggaatttatgagaaattggaggctctggaatgcaacgatcagatagagtattaca
aaaagtcagcagattttttgaaaattagtaatttgacaaaagaggattatcaaaaagtag
cggactcgtgtgatcaaaatggcagaattacttgtcttcataatattaccaacacctgtg
ctatcccgccatcgtttctcgtgaaatctcaagaaaattgtgaaaaagttcatttcctat
cttcgaatttctggaattgtttgcaacatctcaaatcaaaaaataccattccggatctca
tcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTTTCCTAACTGTATGGCTCA 683 321 506 Antisense
TCATGTCGAAAGACCCTTTTCTTCG 535 621 587 Antisense
GACATTTCTTCGAGACTTTTGTAGT 160 371 648 Antisense
GTAATTGGATATCTTCATACCTATT 522 463 679 Antisense
TGGCTCTAATTCCGTCAGTGCTAGA 468 543 722 Antisense
TGGAGGCTCTGGAATGCAACGATCA 689 547 767 Antisense
AGTAGCGGACTCGTGTGATCAAAAT 174 63 861 Antisense
ATATTACCAACACCTGTGCTATCCC 240 19 908 Antisense
CGCCATCGTTTCTCGTGAAATCTCA 18 257 932 Antisense
GTTCATTTCCTATCTTCGAATTTCT 512 443 973 Antisense
AAATACCATTCCGGATCTCATCAAA 250 115 1026 Antisense
Sequence Source Affymetrix Proprietary Database