[Home] | [Total List]

[180275_at]

Description T23E1.1 /REP_DB=WormBase Gene ID /WP=CE17257 /TR=O45205 /GB=AAC04456.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 8.6
(1.3)
A 		11.4
(3)
A 		1.4
(-3)
A 		1.7
(-2.8)
A 		10
B 1.3
(-3)
A 		13.8
(3)
A 		10.4
(1.4)
A 		3.5
(-1.9)
A 		13
C 22.1
(1.7)
A 		27.5
(3)
A 		2.4
(-2.9)
A 		1.9
(-3)
A 		26
avr 10.7
(0.3) 		17.6
(3) 		4.7
(-2.1) 		2.4
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.8
(-3)
A 		24.2
(0.6)
A 		38.9
(3)
A 		7.3
(-2.3)
A 		2.8
(-3)
A 		2.9
(-3)
A 		36
B 16.4
(2.3)
A 		18.4
(3)
A 		1.1
(-3)
A 		5.8
(-1.4)
A 		15.3
(1.9)
A 		3.9
(-2)
A 		17
C 5.1
(-2)
A 		3.5
(-3)
A 		4.6
(-2.3)
A 		8.9
(0.5)
A 		12.7
(3)
A 		10.9
(1.8)
A 		9
avr 8.1
(-1.6) 		15.4
(3) 		14.9
(2.7) 		7.3
(-2.1) 		10.3
(-0.2) 		5.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.1
(3)
A 		2.5
(1.7)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3
B 0.4
(-3)
A 		3.4
(3)
A 		2.4
(1)
A 		0.7
(-2.4)
A 		3
C 7.3
(2.5)
A 		7.9
(3)
A 		0.8
(-2.6)
A 		0.3
(-3)
A 		8
avr 3.6
(1.6) 		4.6
(3) 		1.2
(-1.9) 		0.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A 		8.6
(3)
A 		8.5
(2.9)
A 		1.9
(-2)
A 		0.8
(-2.8)
A 		0.7
(-2.9)
A 		8
B 5.7
(2.5)
A 		6.1
(2.9)
A 		0.3
(-3)
A 		1.5
(-1.8)
A 		6.2
(3)
A 		1.4
(-1.9)
A 		6
C 1.9
(-1.4)
A 		1.1
(-3)
A 		1.2
(-2.8)
A 		1.8
(-1.6)
A 		4.1
(3)
A 		3.7
(2.2)
A 		3
avr 2.7
(-1.3) 		5.3
(3) 		3.3
(-0.3) 		1.7
(-3) 		3.7
(0.3) 		1.9
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11072
Sequence Type Exemplar sequence
Representative Public ID T23E1.1 NCBI
Target Description T23E1.1 /REP_DB=WormBase Gene ID /WP=CE17257 /TR=O45205 /GB=AAC04456.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067895
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000009484 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3151284:3155983:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067895 8/11 Cross Hyb Matching Probes None
T23E1.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3151378-3155989(+) 96.53 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04456 Hypothetical protein T23E1.1 [Caenorhabditis elegans] ref|NP_500296.2| T23E1.1 [Caenorhabditis elegans] 0.0
blast CAE59889 Hypothetical protein CBG03373 [Caenorhabditis briggsae] 1.0E-136
blast CAE64286 Hypothetical protein CBG08954 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.7E-11
Sequence
Target Sequence 
>C. ELEGANS:180275_AT
tttgaaaattctttgcttagccgagaaaattcaaaatccagaagctgtgacattgctgga
atcgaggatgaattttgcatttgctcaaaacttgcgcagattggaattgataaacgaccc
gaaattttacgcaatcttctgaaaattgtgaagcatgaattttccggccaaaaatgcatt
ttgaatatcgaaattgactctgaaaatttgaagttcagaatttaccgatcaataacattt
ttcaaatttttcggatttcttacaactgcaactgtaaaattagaaaaaggattttctaag
ccgattcgactgaaattcggaggaaaagcgagatttttatcattggagccggatgacttg
gagctcagagaacctttgaaatttatagaatcaaatcatagtttggaaatggatagggtt
tcggacaattgctatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGAAAATTCTTTGCTTAGCCGAG 594 667 1246 Antisense
GCTGTGACATTGCTGGAATCGAGGA 190 295 1289 Antisense
GCATTTGCTCAAAACTTGCGCAGAT 107 309 1322 Antisense
GATTGGAATTGATAAACGACCCGAA 553 435 1344 Antisense
GACCCGAAATTTTACGCAATCTTCT 609 381 1361 Antisense
GTGAAGCATGAATTTTCCGGCCAAA 550 481 1393 Antisense
TTTCGGATTTCTTACAACTGCAACT 268 671 1494 Antisense
AGGATTTTCTAAGCCGATTCGACTG 374 57 1533 Antisense
GCGAGATTTTTATCATTGGAGCCGG 164 289 1573 Antisense
GGAGCCGGATGACTTGGAGCTCAGA 508 521 1590 Antisense
TAGGGTTTCGGACAATTGCTATCGG 237 487 1659 Antisense
Sequence Source Affymetrix Proprietary Database