[Home] | [Total List]

[180274_at] 7TM chemoreceptor, sru family

Description C38C3.1 /REP_DB=WormBase Gene ID /WP=CE08637 /TR=O17080 /GB=AAB70332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 17      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 47.3
(-1.1)
A 		61.3
(3)
A 		40.6
(-3)
A 		61
(2.9)
A 		21
B 26.7
(-3)
A 		55.4
(0.4)
A 		77.2
(3)
A 		63.4
(1.4)
P 		51
C 40.9
(-2.3)
A 		42.2
(-2.3)
A 		28.6
(-3)
A 		137.4
(3)
P 		109
avr 38.3
(-3) 		53
(-1.2) 		48.8
(-1.7) 		87.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 16.8
(-0.6)
A 		11.1
(-1.5)
A 		37.7
(2.9)
A 		2.1
(-3)
A 		38.5
(3)
A 		3.9
(-2.7)
A 		36
B 56.8
(3)
A 		25.3
(-1.7)
A 		45.1
(1.3)
A 		16.5
(-3)
A 		35.9
(-0.1)
A 		41
(0.6)
A 		40
C 36.2
(2)
A 		32.7
(1.5)
A 		2.8
(-2.9)
A 		10.3
(-1.8)
A 		43.1
(3)
A 		1.8
(-3)
A 		41
avr 36.6
(2.5) 		23
(-0.3) 		28.5
(0.8) 		9.6
(-3) 		39.2
(3) 		15.6
(-1.8) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 17.2
(3)
A 		13.3
(0.2)
A 		10.6
(-1.8)
A 		8.9
(-3)
A 		8
B 8.5
(-3)
A 		13.7
(0.3)
A 		17.9
(3)
A 		13.5
(0.2)
P 		9
C 13.5
(-1.4)
A 		12.1
(-2)
A 		10
(-3)
A 		23.2
(3)
P 		13
avr 13.1
(-2.3) 		13
(-2.5) 		12.8
(-3) 		15.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.1
(-1.6)
A 		3.9
(-1.2)
A 		8.2
(1.2)
A 		0.5
(-3)
A 		11.6
(3)
A 		0.9
(-2.8)
A 		11
B 19.8
(3)
A 		8.4
(-1.4)
A 		11
(-0.4)
A 		4.4
(-3)
A 		14.6
(1)
A 		15.3
(1.2)
A 		15
C 13.4
(2.7)
A 		10
(1.2)
A 		0.7
(-3)
A 		2.1
(-2.3)
A 		14
(3)
A 		0.6
(-3)
A 		13
avr 12.1
(2.3) 		7.4
(-0.2) 		6.6
(-0.7) 		2.3
(-3) 		13.4
(3) 		5.6
(-1.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180274_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15919
Sequence Type Exemplar sequence
Representative Public ID C38C3.1 NCBI
Target Description C38C3.1 /REP_DB=WormBase Gene ID /WP=CE08637 /TR=O17080 /GB=AAB70332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071033(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071033 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-28) (sru-28) mRNA, complete cds. 10/11 A 
GENEFINDER00000040097 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1506124:1507925:1 10/11 None
C38C3.1 ENSEMBL cdna:known chromosome:CEL140:V:1506124:1507925:1 gene:C38C3.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040095 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1506123-1507925(+) 87.36 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sru family
Gene Symbol sru-28
Ensembl C38C3.1
Entrez Gene 183299 Entrez gene
SwissProt O17080 EMBL-EBI
WormBase CE33279 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70332 Serpentine receptor, class u protein 28 [Caenorhabditis elegans] ref|NP_503434.2| Serpentine Receptor, class U family member (sru-28) [Caenorhabditis elegans] 1.0E-162
blast AAB70333 Serpentine receptor, class u protein 27 [Caenorhabditis elegans] ref|NP_503431.1| Serpentine Receptor, class U family member (sru-27) [Caenorhabditis elegans] 1.0E-147
blast CAE59869 Hypothetical protein CBG03345 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.4E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503434.2 6 34-56,69-91,113-135,155-177,211-233,254-276
C38C3.1 6 34-56,69-91,113-135,155-177,211-233,254-276
GENEFINDER00000040097 6 34-56,69-91,113-135,155-177,211-233,254-276
Sequence
Target Sequence 
>C. ELEGANS:180274_AT
aaagactcttgagtttgtctccaaaaatgtagtgaaatggtacaaaatcaatcgagttat
actaaaatcagcacttccgttcatttcaatttatccaattttctttacatttttcctgtg
gccagctgttggttactgtacagcggcactggggccgtttccatttgggtcagtaattct
cggatttcgagaatcctggtttgggttacgaaataattattttctactattcaacaatct
tttctggttgtcggcaagtttgatcaataactcggttcttctcgtaaagcttgcacatct
taagtctactacagcagctcacacaagatctcaaaaatcccataaagcagaggtgtctct
cacagtaaccactgtatccatgatttgttcatatctctcaaattccatgatagtgattgc
tgctcaactcaattcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACTCTTGAGTTTGTCTCCAAA 361 123 513 Antisense
AGCACTTCCGTTCATTTCAATTTAT 321 77 582 Antisense
TTCTTTACATTTTTCCTGTGGCCAG 445 689 613 Antisense
GTGGCCAGCTGTTGGTTACTGTACA 3 493 630 Antisense
TGTACAGCGGCACTGGGGCCGTTTC 509 557 649 Antisense
GGCCGTTTCCATTTGGGTCAGTAAT 100 531 665 Antisense
TGGGTCAGTAATTCTCGGATTTCGA 652 553 678 Antisense
AGAGGTGTCTCTCACAGTAACCACT 678 65 861 Antisense
CAGTAACCACTGTATCCATGATTTG 308 207 875 Antisense
TTGTTCATATCTCTCAAATTCCATG 704 705 897 Antisense
GATTGCTGCTCAACTCAATTCAATT 151 435 927 Antisense
Sequence Source Affymetrix Proprietary Database