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[180272_at]

Description K09B11.3 /REP_DB=WormBase Gene ID /WP=CE19990 /TR=Q9XU78 /GB=CAB05552.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 12.8
(-1)
A 		7.2
(-3)
A 		13
(-0.9)
A 		23.8
(3)
A 		17
B 4
(-3)
A 		7.3
(-1.7)
A 		7.1
(-1.8)
A 		19.2
(3)
A 		15
C 11.2
(-2.2)
A 		32.7
(2.6)
A 		7.4
(-3)
A 		34.6
(3)
A 		27
avr 9.3
(-3) 		15.7
(-0.7) 		9.2
(-3) 		25.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.6
(-1.4)
A 		5.7
(-2.1)
A 		3.4
(-2.9)
A 		5.7
(-2.1)
A 		19.6
(3)
A 		3.1
(-3)
A 		17
B 10.8
(3)
A 		5.5
(-1.4)
A 		7
(-0.2)
A 		3.6
(-3)
A 		10.6
(2.8)
A 		4.5
(-2.3)
A 		7
C 4.9
(-2)
A 		11.1
(0.1)
A 		2.4
(-2.9)
A 		11.2
(0.2)
A 		2
(-3)
A 		19.5
(3)
A 		18
avr 7.8
(0.3) 		7.4
(-0.1) 		4.3
(-3) 		6.8
(-0.7) 		10.7
(3) 		9
(1.4) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.6
(3)
A 		1.6
(-3)
A 		3.4
(0.6)
A 		3.5
(0.8)
A 		3
B 1.3
(-3)
A 		1.8
(-1.9)
A 		1.6
(-2.4)
A 		4.1
(3)
A 		3
C 3.7
(-2)
A 		9.4
(3)
A 		2.6
(-3)
A 		5.8
(-0.2)
A 		7
avr 3.2
(-0.9) 		4.3
(2.4) 		2.5
(-3) 		4.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-2.2)
A 		2
(-1.5)
A 		0.7
(-3)
A 		1.4
(-2.2)
A 		5.9
(3)
A 		0.7
(-3)
A 		5
B 3.8
(2.1)
A 		1.8
(-1.5)
A 		1.7
(-1.7)
A 		1
(-3)
A 		4.3
(3)
A 		1.7
(-1.7)
A 		3
C 1.8
(-1.8)
A 		3.4
(-0.2)
A 		0.6
(-3)
A 		2.2
(-1.4)
A 		0.6
(-3)
A 		6.5
(3)
A 		6
avr 2.3
(-0) 		2.4
(0.2) 		1
(-3) 		1.5
(-1.8) 		3.6
(3) 		3
(1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9529
Sequence Type Exemplar sequence
Representative Public ID K09B11.3 NCBI
Target Description K09B11.3 /REP_DB=WormBase Gene ID /WP=CE19990 /TR=Q9XU78 /GB=CAB05552.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070189 NCBI Caenorhabditis elegans K09B11.3 (K09B11.3) mRNA, complete cds. 11/11 None
K09B11.3 ENSEMBL cdna:known chromosome:CEL140:IV:13430209:13430553:-1 gene:K09B11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037691 8/11 Cross Hyb Matching Probes None
Y46G5A.16 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4466918-4467254(-) 51.3 93.91
chrIV:13430214-13430559(-) 52.75 100.0
Public Domain and Genome References
Gene Title
Ensembl K09B11.3
Entrez Gene 187191 Entrez gene
SwissProt Q9XU78 EMBL-EBI
WormBase CE19990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05552 Hypothetical protein K09B11.3 [Caenorhabditis elegans] ref|NP_502590.1| K09B11.3 [Caenorhabditis elegans] 1.0E-52
Sequence
Target Sequence 
>C. ELEGANS:180272_AT
aggtagcttgcgcaagttctcggcttcgcctcgaacctgagatggggctatatcgaaatc
tcctagaaatttgggatcgattgcttgaagaacgaagtctctgcgatggttttgagctga
gatatgagcgattaaagtttgaggaggtgtgggctcgcggagcaggaaggggcgggaagg
caggagccgaggcaaagtccttcggaggtgacggctgctgtaaaagtggagaggcgcgca
cgcagagtaagaggcggcacgcgcgcaatggccaagtggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTAGCTTGCGCAAGTTCTCGGCT 12 57 29 Antisense
CTTCGCCTCGAACCTGAGATGGGGC 690 217 52 Antisense
GATGGGGCTATATCGAAATCTCCTA 552 405 69 Antisense
GAACGAAGTCTCTGCGATGGTTTTG 508 347 118 Antisense
GTTTGAGGAGGTGTGGGCTCGCGGA 350 447 165 Antisense
GGCTCGCGGAGCAGGAAGGGGCGGG 196 535 180 Antisense
GCAGGAGCCGAGGCAAAGTCCTTCG 444 311 208 Antisense
CTTCGGAGGTGACGGCTGCTGTAAA 639 215 228 Antisense
TGGAGAGGCGCGCACGCAGAGTAAG 430 549 255 Antisense
GCAGAGTAAGAGGCGGCACGCGCGC 453 311 270 Antisense
CACGCGCGCAATGGCCAAGTGGTAA 582 199 286 Antisense
Sequence Source Affymetrix Proprietary Database