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[180271_at]

Description W03D8.7 /REP_DB=WormBase Gene ID /WP=CE18327 /TR=O45002 /GB=AAK21493.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 58      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 83.5
(3)
A 		40.9
(-3)
A 		66.3
(0.6)
A 		70.4
(1.2)
A 		43
B 54
(-0.9)
A 		59.1
(-0.2)
A 		81.3
(3)
A 		39.6
(-3)
A 		42
C 42.8
(-3)
A 		100.2
(3)
A 		47.5
(-2.5)
A 		56.9
(-1.5)
A 		57
avr 60.1
(-0.6) 		66.7
(3) 		65
(2.1) 		55.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 40.8
(-3)
A 		56.2
(3)
A 		48
(-0.2)
A 		54.9
(2.5)
A 		49.3
(0.3)
A 		48.8
(0.1)
A 		15
B 45.7
(2.2)
A 		39
(-3)
A 		39.9
(-2.3)
A 		45.4
(1.9)
A 		46.8
(3)
A 		40.3
(-2)
A 		8
C 80.1
(3)
A 		49.8
(0.2)
A 		35.6
(-1.1)
A 		15
(-3)
A 		56.5
(0.8)
A 		34.1
(-1.2)
A 		65
avr 55.5
(3) 		48.3
(0.5) 		41.2
(-2) 		38.4
(-3) 		50.9
(1.4) 		41.1
(-2.1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 30.4
(3)
A 		8.9
(-3)
A 		17.3
(-0.7)
A 		10.3
(-2.6)
A 		22
B 17.2
(2.1)
A 		14.6
(0.6)
A 		18.8
(3)
A 		8.4
(-3)
A 		10
C 14.2
(-1.6)
A 		28.8
(3)
A 		16.5
(-0.8)
A 		9.6
(-3)
A 		19
avr 20.6
(3) 		17.4
(1.3) 		17.5
(1.3) 		9.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.5
(-3)
A 		20
(3)
A 		10.4
(-1.6)
A 		13.9
(0.1)
A 		14.9
(0.6)
A 		11.9
(-0.9)
A 		13
B 15.9
(1)
A 		13
(-0.9)
A 		9.7
(-3)
A 		12
(-1.5)
A 		19
(3)
A 		15
(0.4)
A 		9
C 29.7
(3)
A 		15.2
(-0.3)
A 		9.1
(-1.6)
A 		3
(-3)
A 		18.3
(0.4)
A 		11.4
(-1.1)
A 		27
avr 17.7
(3) 		16.1
(1.8) 		9.7
(-2.9) 		9.6
(-3) 		17.4
(2.8) 		12.8
(-0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.73
Sequence Type Exemplar sequence
Representative Public ID W03D8.7 NCBI
Target Description W03D8.7 /REP_DB=WormBase Gene ID /WP=CE18327 /TR=O45002 /GB=AAK21493.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058647 NCBI Caenorhabditis elegans W03D8.7 (W03D8.7) mRNA, complete cds. 11/11 None
GENEFINDER00000016965 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2791690:2797262:1 10/11 None
SNAP00000016957 ENSEMBL cdna:SNAP chromosome:CEL140:I:2795298:2797262:1 11/11 None
W03D8.7 ENSEMBL cdna:known chromosome:CEL140:I:2796384:2797262:1 gene:W03D8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2796383-2797262(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03D8.7
Entrez Gene 189156 Entrez gene
SwissProt O45002 EMBL-EBI
WormBase CE18327 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491047 W03D8.8 [Caenorhabditis elegans] gb|AAK21494.2| Hypothetical protein W03D8.8 [Caenorhabditis elegans] 0.0
blast CAE60489 Hypothetical protein CBG04103 [Caenorhabditis briggsae] 0.0
blast CAE67026 Hypothetical protein CBG12427 [Caenorhabditis briggsae] 1.0E-157
blast NP_491048 W03D8.7 [Caenorhabditis elegans] gb|AAK21493.1| Hypothetical protein W03D8.7 [Caenorhabditis elegans] 1.0E-116
blast NP_491048 W03D8.7 [Caenorhabditis elegans] gb|AAK21493.1| Hypothetical protein W03D8.7 [Caenorhabditis elegans] 1.0E-114
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 1.0E-95
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 2.0E-95
blast CAE60487 Hypothetical protein CBG04101 [Caenorhabditis briggsae] 3.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 4.0E-32
Pfam IPR006862 EMBL-EBI Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase 3.7E-102
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 4.0E-32
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 4.0E-32
Sequence
Target Sequence 
>C. ELEGANS:180271_AT
atgagctttgaaagatcccgccacgatttgaagctgaaaacatctgacggcatgcactgc
gtgatgacaaataaggagattgtctgcctggcatctcaattcttccgtcaacatttgaag
gacacaacgaccgagttcacagttggaagagcagattcagtggagagcattgacatttgt
ctcacatacatgatcactggaatctacaaaaaacctgctcaattttctccaaaactcgct
tcagagatatttgctttggctaatcaatggaaggttttggagccgaaagtcctcaagaac
tcgattgaaaagcattgctgtgaggagttacaaaagaactatgaggatatcatgtacgtg
tgcaatatgctcatcatcgccgaagacgctcactttaccaacgttcagagctgctgcatt
gccactttggtcttctatcacgtacgcgatttcattcggattattgttaatggggttgaa
tcacccactgaagagtgcttctctcaacgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCTTTGAAAGATCCCGCCACG 239 45 13 Antisense
ATCCCGCCACGATTTGAAGCTGAAA 247 37 27 Antisense
CATCTGACGGCATGCACTGCGTGAT 61 211 53 Antisense
ATAAGGAGATTGTCTGCCTGGCATC 505 25 83 Antisense
AGGACACAACGACCGAGTTCACAGT 545 55 131 Antisense
GGAGCCGAAAGTCCTCAAGAACTCG 62 521 291 Antisense
TATGCTCATCATCGCCGAAGACGCT 215 657 378 Antisense
CGAAGACGCTCACTTTACCAACGTT 538 251 393 Antisense
TACCAACGTTCAGAGCTGCTGCATT 277 651 408 Antisense
GTCTTCTATCACGTACGCGATTTCA 283 469 442 Antisense
TGAAGAGTGCTTCTCTCAACGTCGA 341 575 501 Antisense
Sequence Source Affymetrix Proprietary Database