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[180270_at]

Description T11F8.1 /REP_DB=WormBase Gene ID /WP=CE17234 /TR=O44194 /GB=AAB88555.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 3.8
(-3)
A 		6.2
(-2.6)
A 		5.8
(-2.7)
A 		42
(3)
A 		38
B 2.2
(-3)
A 		4.6
(0.5)
A 		6.3
(3)
A 		5.5
(1.8)
A 		4
C 27.1
(2.5)
A 		3.6
(-3)
A 		29.3
(3)
A 		10.3
(-1.4)
A 		26
avr 11
(-0.4) 		4.8
(-3) 		13.8
(0.7) 		19.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 40.7
(-1.5)
A 		30.2
(-1.9)
A 		35.9
(-1.7)
A 		2.7
(-3)
A 		105.7
(1.1)
P 		154
(3)
P 		151
B 22.9
(-2.8)
A 		15.3
(-3)
A 		34.7
(-2.4)
A 		16.2
(-3)
A 		98.9
(-0.3)
P 		198.8
(3)
P 		184
C 23.6
(-2.5)
A 		32.3
(-2.3)
A 		5.5
(-3)
A 		49.8
(-1.8)
A 		153.4
(0.9)
P 		231
(3)
P 		226
avr 29.1
(-2.8) 		25.9
(-2.9) 		25.4
(-2.9) 		22.9
(-3) 		119.3
(0.4) 		194.6
(3) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.4
(-2.9)
A 		1.3
(-3)
A 		1.5
(-2.8)
A 		6.1
(3)
A 		5
B 0.7
(-3)
A 		1.1
(0)
A 		1.5
(3)
A 		1.2
(0.8)
A 		1
C 9
(2.2)
A 		1
(-3)
A 		10.2
(3)
A 		1.7
(-2.5)
A 		9
avr 3.7
(1.7) 		1.1
(-3) 		4.4
(3) 		3
(0.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 7.5
(-1.9)
A 		10.7
(-1.4)
A 		7.8
(-1.8)
A 		0.7
(-3)
A 		31.9
(2.1)
P 		37.5
(3)
P 		37
B 8
(-2.7)
A 		5.1
(-2.9)
A 		8.4
(-2.6)
A 		4.3
(-3)
A 		40.2
(0.1)
P 		74.1
(3)
P 		70
C 8.8
(-2.4)
A 		9.9
(-2.3)
A 		1.4
(-3)
A 		10
(-2.3)
A 		49.6
(0.8)
P 		77.3
(3)
P 		76
avr 8.1
(-2.7) 		8.6
(-2.6) 		5.9
(-2.9) 		5
(-3) 		40.6
(0.7) 		63
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11049
Sequence Type Exemplar sequence
Representative Public ID T11F8.1 NCBI
Target Description T11F8.1 /REP_DB=WormBase Gene ID /WP=CE17234 /TR=O44194 /GB=AAB88555.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068417 NCBI Caenorhabditis elegans T11F8.1 (T11F8.1) mRNA, complete cds. 11/11 None
SNAP00000002006 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5479623:5480333:1 10/11 None
GENEFINDER00000002010 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5479623:5480504:1 11/11 None
T11F8.1 ENSEMBL cdna:known chromosome:CEL140:IV:5479623:5480504:1 gene:T11F8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5479628-5480510(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F8.1
Entrez Gene 188416 Entrez gene
SwissProt O44194 EMBL-EBI
WormBase CE17234 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500818 T11F8.1 [Caenorhabditis elegans] gb|AAB88555.1| Hypothetical protein T11F8.1 [Caenorhabditis elegans] 1.0E-142
blast NP_500818 T11F8.1 [Caenorhabditis elegans] gb|AAB88555.1| Hypothetical protein T11F8.1 [Caenorhabditis elegans] 1.0E-126
blast AAB88316 Hypothetical protein C24D10.5 [Caenorhabditis elegans] ref|NP_500727.1| C24D10.5 [Caenorhabditis elegans] 2.0E-50
blast NP_500817 T11F8.2 [Caenorhabditis elegans] gb|AAB88556.2| Hypothetical protein T11F8.2 [Caenorhabditis elegans] 2.0E-50
blast NP_500817 T11F8.2 [Caenorhabditis elegans] gb|AAB88556.2| Hypothetical protein T11F8.2 [Caenorhabditis elegans] 3.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500818.1 5 7-26,41-63,84-103,108-130,150-172
T11F8.1 5 7-26,41-63,84-103,108-130,150-172
SNAP00000002006 6 7-26,41-63,84-103,108-130,150-168,178-195
GENEFINDER00000002010 5 7-26,41-63,84-103,108-130,150-172
Sequence
Target Sequence 
>C. ELEGANS:180270_AT
cttggtctacttattggattcgccaaatcgtacaaattcggcgacagatcggatgaaact
ggagaattggggaatttcaaatggcactacagaattggaacttatggaatttttcaaaac
aatcttctggcactgttaattttctataatttccaaaattctccattgacaacatacttc
gcattcttcgtaagcaacgtgacaactgccatgttttattttgcgttcatttggaaaatg
caaccgatgtgtcgtgaaatgaaatgctatgatggatggctacataattcaattttgtac
tcttcagttggaattgttccctttggagtgctcggaatgtcgatgtacagtggaaattat
gatcgtatgctgaagatttggttgccagcgatttactacctaccagcgattgcgctcaat
attcgaacacattcggcagtcatgagaggagaaattgagcttgttgagccgatcgagaat
atcaaaccaatggagtcaaataccaagtcaaccaataccacttccgtgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGTCTACTTATTGGATTCGCCA 617 213 169 Antisense
CAATCTTCTGGCACTGTTAATTTTC 549 179 288 Antisense
TTGACAACATACTTCGCATTCTTCG 668 703 334 Antisense
TAAGCAACGTGACAACTGCCATGTT 662 637 359 Antisense
ACTGCCATGTTTTATTTTGCGTTCA 191 99 373 Antisense
GGAATTGTTCCCTTTGGAGTGCTCG 676 533 478 Antisense
GGAGTGCTCGGAATGTCGATGTACA 491 517 493 Antisense
GGTTGCCAGCGATTTACTACCTACC 642 505 548 Antisense
TACTACCTACCAGCGATTGCGCTCA 346 645 562 Antisense
GATTGCGCTCAATATTCGAACACAT 657 433 576 Antisense
GTCAACCAATACCACTTCCGTGTAC 360 463 675 Antisense
Sequence Source Affymetrix Proprietary Database