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[180269_at]

Description C35B1.5 /REP_DB=WormBase Gene ID /WP=CE16903 /TR=O45060 /GB=AAC02564.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 27      6grp_total > 61      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3569
1 2 3 4 range
A 5139.3
(-3)
P 		7107.9
(1.3)
P 		7861
(3)
P 		5379.8
(-2.5)
P 		2722
B 4292.2
(-3)
P 		6183.4
(1.4)
P 		6872.4
(3)
P 		4441.1
(-2.7)
P 		2580
C 4487.3
(-3)
P 		6242.2
(0.6)
P 		7397.2
(3)
P 		5518.7
(-0.9)
P 		2910
avr 4639.6
(-3) 		6511.2
(1.1) 		7376.9
(3) 		5113.2
(-2) 		2737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3340
1 2 3 4 5 6 range
A 6691.4
(-0.7)
P 		6188.5
(-1.6)
P 		8673.1
(3)
P 		8352.5
(2.4)
P 		6750.2
(-0.6)
P 		5440.8
(-3)
P 		3232
B 5924.6
(-2.3)
P 		5866.8
(-2.4)
P 		7508.3
(1.8)
P 		7978.3
(3)
P 		7855.1
(2.7)
P 		5632.2
(-3)
P 		2346
C 6352.1
(-1.1)
P 		7121.8
(0.3)
P 		7482.1
(0.9)
P 		8619.9
(3)
P 		6216.4
(-1.4)
P 		5333.5
(-3)
P 		3286
avr 6322.7
(-1.2) 		6392.4
(-1.1) 		7887.8
(2.1) 		8316.9
(3) 		6940.6
(0.1) 		5468.8
(-3) 		2848
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1791
1 2 3 4 range
A 1871.2
(2.1)
P 		1542.9
(0.6)
P 		2055
(3)
P 		787.5
(-3)
P 		1268
B 1368.8
(0.9)
P 		1527.2
(2.4)
P 		1592.5
(3)
P 		946.4
(-3)
P 		646
C 1485.4
(-1)
P 		1794.7
(0.1)
P 		2578.1
(3)
P 		930.5
(-3)
P 		1648
avr 1575.1
(0.5) 		1621.6
(0.7) 		2075.2
(3) 		888.1
(-3) 		1187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1958
1 2 3 4 5 6 range
A 1233.5
(-3)
P 		2200.9
(3)
P 		1888.8
(1.1)
P 		2118.4
(2.5)
P 		2036.9
(2)
P 		1324.7
(-2.4)
P 		967
B 2061.5
(-2)
P 		1952.8
(-2.4)
P 		1823.2
(-3)
P 		2113.2
(-1.7)
P 		3191.4
(3)
P 		2100.2
(-1.8)
P 		1368
C 2354.5
(3)
P 		2173.1
(1.2)
P 		1904.3
(-1.3)
P 		1733.5
(-3)
P 		2011.5
(-0.3)
P 		1785.4
(-2.5)
P 		621
avr 1883.2
(-1.7) 		2108.9
(0.3) 		1872.1
(-1.8) 		1988.4
(-0.8) 		2413.3
(3) 		1736.8
(-3) 		677
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10941
Sequence Type Exemplar sequence
Representative Public ID C35B1.5 NCBI
Target Description C35B1.5 /REP_DB=WormBase Gene ID /WP=CE16903 /TR=O45060 /GB=AAC02564.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068077 NCBI Caenorhabditis elegans C35B1.5 (C35B1.5) mRNA, complete cds. 11/11 None
GENEFINDER00000043234 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4083657:4084183:-1 11/11 None
C35B1.5.3 ENSEMBL cdna:known chromosome:CEL140:IV:4083147:4084195:-1 gene:C35B1.5 11/11 None
C35B1.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:4083587:4084202:-1 gene:C35B1.5 11/11 None
C35B1.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:4083603:4084208:-1 gene:C35B1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4083662-4084189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35B1.5
Entrez Gene 177168 Entrez gene
SwissProt O45060 EMBL-EBI
WormBase CE16903 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02564 Hypothetical protein C35B1.5 [Caenorhabditis elegans] ref|NP_500478.1| C35B1.5 [Caenorhabditis elegans] 5.0E-84
blast CAE56273 Hypothetical protein CBG23918 [Caenorhabditis briggsae] 4.0E-72
Sequence
Target Sequence 
>C. ELEGANS:180269_AT
gttcgctggcaagcctctaatcaaccaagaaggcaaagaacttgacggaggagatgctct
ccgtgggaagaaggtcgtcgccttgtatttttcagcaatgtggtgcggatcgtgccgtca
atttactccgaagctcaagagattctatgaagccttgaaggccgctggaaaggaaatcga
agtggtcctagtgagcagagatcgtgaagccgaggatttgctggaatacctgggacacgg
aggtgattgggtggcgattccgtttggtgatgagagaattcaagaatacctgaagaaata
cgaggtgccaactatcccagccttcaagcttatcaacaatgctggtgagcttcttcatga
cgcccgtgctgacgtcactgagcgtggaaaggacgatgccgtggcactttttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGCTGGCAAGCCTCTAATCAAC 98 443 24 Antisense
CTCCGTGGGAAGAAGGTCGTCGCCT 129 211 82 Antisense
TCGTCGCCTTGTATTTTTCAGCAAT 293 603 98 Antisense
GCAATGTGGTGCGGATCGTGCCGTC 586 321 118 Antisense
TCGTGCCGTCAATTTACTCCGAAGC 65 603 133 Antisense
GATTTGCTGGAATACCTGGGACACG 643 427 238 Antisense
TGATTGGGTGGCGATTCCGTTTGGT 435 563 267 Antisense
GAAATACGAGGTGCCAACTATCCCA 465 363 318 Antisense
ACTATCCCAGCCTTCAAGCTTATCA 701 101 334 Antisense
CGTGCTGACGTCACTGAGCGTGGAA 414 245 388 Antisense
GGACGATGCCGTGGCACTTTTTGAC 183 523 414 Antisense
Sequence Source Affymetrix Proprietary Database