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[180268_at]

Description C31G12.1 /REP_DB=WormBase Gene ID /WP=CE15660 /TR=O17629 /GB=CAB03932.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 4.6
(-2.8)
A 		3.1
(-2.9)
A 		2.3
(-3)
A 		58.7
(3)
A 		56
B 18.2
(1.1)
A 		1.5
(-3)
A 		16.3
(0.6)
A 		26.1
(3)
A 		25
C 11.8
(-2.4)
A 		3
(-3)
A 		15.2
(-2.2)
A 		90.5
(3)
P 		88
avr 11.5
(-2) 		2.5
(-3) 		11.3
(-2.1) 		58.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 6.8
(-2.6)
A 		3.4
(-3)
A 		20.6
(-1.1)
A 		6.4
(-2.7)
A 		39.1
(1)
A 		57.4
(3)
A 		54
B 2.5
(-2.9)
A 		1.3
(-3)
A 		1.2
(-3)
A 		4
(-2.8)
A 		40.8
(0.2)
A 		75.4
(3)
P 		74
C 11.4
(-2.1)
A 		26
(-0.7)
A 		1.9
(-3)
A 		2.3
(-3)
A 		41.1
(0.7)
A 		65.4
(3)
P 		64
avr 6.9
(-2.7) 		10.2
(-2.4) 		7.9
(-2.6) 		4.2
(-3) 		40.3
(0.5) 		66.1
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.7
(-2.2)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		8.6
(3)
A 		8
B 5.8
(3)
A 		0.4
(-3)
A 		3.8
(0.8)
A 		5.6
(2.8)
A 		5
C 3.9
(-1.8)
A 		0.9
(-3)
A 		5.3
(-1.2)
A 		15.3
(3)
P 		14
avr 3.8
(-1) 		0.7
(-3) 		3.2
(-1.4) 		9.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.2
(-3)
A 		4.5
(-1.5)
A 		1.6
(-2.8)
A 		11.8
(2)
A 		14
(3)
A 		13
B 0.9
(-2.9)
A 		0.4
(-3)
A 		0.3
(-3)
A 		1.1
(-2.8)
A 		16.6
(0.5)
A 		28.1
(3)
P 		28
C 4.2
(-2)
A 		7.9
(-0.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		13.3
(0.6)
A 		21.9
(3)
P 		21
avr 2.1
(-2.7) 		3.2
(-2.4) 		1.8
(-2.8) 		1.1
(-3) 		13.9
(0.8) 		21.3
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14704
Sequence Type Exemplar sequence
Representative Public ID C31G12.1 NCBI
Target Description C31G12.1 /REP_DB=WormBase Gene ID /WP=CE15660 /TR=O17629 /GB=CAB03932.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075152 NCBI Caenorhabditis elegans C31G12.1 (C31G12.1) mRNA, complete cds. 11/11 None
SNAP00000007428 ENSEMBL cdna:SNAP chromosome:CEL140:V:18182575:18183863:1 11/11 None
GENEFINDER00000007433 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18182575:18183863:1 11/11 None
C31G12.1 ENSEMBL cdna:known chromosome:CEL140:V:18182575:18183863:1 gene:C31G12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009396 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18182574-18183863(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31G12.1
Entrez Gene 183090 Entrez gene
SwissProt O17629 EMBL-EBI
WormBase CE15660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03932 Hypothetical protein C31G12.1 [Caenorhabditis elegans] ref|NP_507553.1| C31G12.1 [Caenorhabditis elegans] 1.0E-109
blast CAB04914 Hypothetical protein W04E12.2 [Caenorhabditis elegans] ref|NP_507825.1| W04E12.2 [Caenorhabditis elegans] 5.0E-96
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507553.1 4 50-69,74-96,143-161,165-182
C31G12.1 4 50-69,74-96,143-161,165-182
SNAP00000007428 4 50-69,74-96,143-161,165-182
GENEFINDER00000007433 4 50-69,74-96,143-161,165-182
Sequence
Target Sequence 
>C. ELEGANS:180268_AT
aaaaagctcaacgcagaagtgtctggaaatccagttgtgcgtaagctgtcgactgtaaat
gccttgtctctgacagctttcggtcgttcaatggttattctcagagacgtttttgagttc
gattttctactgatgaatacagtggctgttacaattgcatggttctcgtttggttggatt
tccaccaagaactacttcacagtttggagattgaacagtttgtcacttgttgcctgtgga
tttttcacaattatctgcgcgaatcaatacatttgtgataatcactcctggattgtttca
ttttcgacttttttcttcaccgcccatgttcgtctgacaaatgccacaatttctagcatc
gaacttcctgaaaagacgagaagatctcatgaacacatcaaacttcaccgacttttagtt
ctgatctttgtattttacatcggattaattttggctattaaaaacggttatcacttgacg
cttgtgttcggcattatgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGCTCAACGCAGAAGTGTCTG 704 127 37 Antisense
GTAAGCTGTCGACTGTAAATGCCTT 5 463 77 Antisense
AAATGCCTTGTCTCTGACAGCTTTC 260 119 93 Antisense
GACAGCTTTCGGTCGTTCAATGGTT 470 367 108 Antisense
GGATTTCCACCAAGAACTACTTCAC 544 509 212 Antisense
CAGTTTGTCACTTGTTGCCTGTGGA 525 207 252 Antisense
GGATTTTTCACAATTATCTGCGCGA 590 509 274 Antisense
GATAATCACTCCTGGATTGTTTCAT 197 423 313 Antisense
ACAATTTCTAGCATCGAACTTCCTG 562 113 382 Antisense
AAAACGGTTATCACTTGACGCTTGT 270 129 497 Antisense
GACGCTTGTGTTCGGCATTATGATT 142 381 513 Antisense
Sequence Source Affymetrix Proprietary Database