[Home] | [Total List]

[180267_s_at]

Description F13D12.8 /REP_DB=WormBase Gene ID /WP=CE20682 /TR=Q9XVX4 /GB=CAA88950.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 52      6grp_total > 91      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 728
1 2 3 4 range
A 697.6
(-1)
P 		457.4
(-3)
P 		618.3
(-1.7)
P 		1185.4
(3)
P 		728
B 623.7
(-2.2)
P 		638.4
(-1.8)
P 		594
(-3)
P 		809.9
(3)
P 		216
C 691
(-1.5)
P 		571.2
(-3)
P 		689.1
(-1.6)
P 		1060.7
(3)
P 		490
avr 670.8
(-1.5) 		555.7
(-3) 		633.8
(-2) 		1018.7
(3) 		463

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 728
1 2 3 4 5 6 range
A 677.3
(1)
P 		644.4
(0.6)
P 		635.1
(0.4)
P 		752.5
(2.1)
P 		814.2
(3)
P 		393.3
(-3)
P 		421
B 894.6
(1)
P 		881.5
(0.9)
P 		528.6
(-2.3)
P 		1121.2
(3)
P 		677
(-1)
P 		449.9
(-3)
P 		671
C 479.8
(-2.7)
P 		830.3
(1.2)
P 		540.5
(-2)
P 		988.8
(3)
P 		625.7
(-1.1)
P 		453.9
(-3)
P 		535
avr 683.9
(-0.1) 		785.4
(1.1) 		568.1
(-1.4) 		954.2
(3) 		705.6
(0.1) 		432.4
(-3) 		522
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 254
(3)
P 		99.3
(-3)
P 		161.6
(-0.6)
P 		173.5
(-0.1)
P 		155
B 198.9
(3)
P 		157.7
(-1)
P 		137.6
(-3)
P 		172.6
(0.4)
P 		61
C 228.7
(2.1)
P 		164.2
(-3)
P 		240.2
(3)
P 		178.8
(-1.8)
P 		76
avr 227.2
(3) 		140.4
(-3) 		179.8
(-0.3) 		175
(-0.6) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 124.9
(-1.8)
P 		229.2
(2.3)
P 		138.3
(-1.3)
P 		190.8
(0.8)
P 		245.7
(3)
P 		95.8
(-3)
P 		150
B 311.3
(3)
P 		293.4
(2.4)
P 		128.3
(-3)
P 		297
(2.5)
P 		275
(1.8)
P 		167.8
(-1.7)
P 		183
C 177.9
(-0.9)
P 		253.3
(3)
P 		137.6
(-3)
P 		198.9
(0.2)
P 		202.5
(0.4)
P 		152
(-2.3)
P 		116
avr 204.7
(0.4) 		258.6
(3) 		134.7
(-3) 		228.9
(1.6) 		241.1
(2.2) 		138.5
(-2.8) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180267_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3180
Sequence Type Exemplar sequence
Representative Public ID F13D12.8 NCBI
Target Description F13D12.8 /REP_DB=WormBase Gene ID /WP=CE20682 /TR=Q9XVX4 /GB=CAA88950.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064105 NCBI Caenorhabditis elegans F13D12.8 (F13D12.8) mRNA, complete cds. 11/11 None
SNAP00000015031 ENSEMBL cdna:SNAP chromosome:CEL140:II:11731131:11732275:-1 11/11 None
GENEFINDER00000015049 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11731131:11732275:-1 11/11 None
F13D12.8 ENSEMBL cdna:known chromosome:CEL140:II:11731131:11732499:-1 gene:F13D12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11731127-11732272(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13D12.8
Entrez Gene 174801 Entrez gene
SwissProt Q9XVX4 EMBL-EBI
WormBase CE20682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88950 Hypothetical protein F13D12.8 [Caenorhabditis elegans] ref|NP_496506.1| F13D12.8 [Caenorhabditis elegans] 1.0E-57
blast CAE59702 Hypothetical protein CBG03133 [Caenorhabditis briggsae] 5.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496506.1 2 7-26,70-92
F13D12.8 2 7-26,70-92
SNAP00000015031 2 7-26,70-92
GENEFINDER00000015049 2 7-26,70-92
Sequence
Target Sequence 
>C. ELEGANS:180267_S_AT
gcgttgcgtggttcgtattattctactgacctgtttcatttttgtcgccttcatttattt
ggccgtctcacatgcgaattccaaaattgtgatcgcttttgatgcaaatgacgaggaagc
ccgccgaattctggacagcgcgatcccgtcgccgacggtcgccagtccattcaacaacaa
tgcaccacagtcgatgtccgtttcggtagcattggtgcttatcgtatcacttatcagtgt
tgctcttcttatcacaggtataatcataatcgccgtcacgctagatccaacttcaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTTGCGTGGTTCGTATTATTCTA 680 289 15 Antisense
TGACCTGTTTCATTTTTGTCGCCTT 605 567 41 Antisense
GTCGCCTTCATTTATTTGGCCGTCT 302 475 58 Antisense
TTTATTTGGCCGTCTCACATGCGAA 458 673 68 Antisense
CAAATGACGAGGAAGCCCGCCGAAT 611 191 119 Antisense
CCCGCCGAATTCTGGACAGCGCGAT 564 259 134 Antisense
GTCGCCAGTCCATTCAACAACAATG 645 473 172 Antisense
TGTCCGTTTCGGTAGCATTGGTGCT 43 557 209 Antisense
ACTTATCAGTGTTGCTCTTCTTATC 436 103 243 Antisense
ATAATCATAATCGCCGTCACGCTAG 111 23 274 Antisense
GTCACGCTAGATCCAACTTCAAATA 369 465 289 Antisense
Sequence Source Affymetrix Proprietary Database