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[180266_s_at]

Description C03A7.2 /REP_DB=WormBase Gene ID /WP=CE07860 /TR=O16508 /GB=AAB65999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2.9
(-3)
A 		14.1
(-1.7)
A 		52.7
(3)
A 		43.4
(1.9)
A 		50
B 24
(-0.1)
A 		48.3
(3)
A 		31.8
(0.9)
A 		1.7
(-3)
A 		47
C 23.5
(-1.8)
A 		26
(-1)
A 		19.9
(-3)
A 		38.6
(3)
A 		19
avr 16.8
(-3) 		29.5
(1.2) 		34.8
(3) 		27.9
(0.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 6.5
(-3)
A 		10.3
(-2.5)
A 		48.5
(3)
A 		24.9
(-0.4)
A 		17.5
(-1.4)
A 		18.7
(-1.3)
A 		42
B 9.4
(-2.1)
A 		24.9
(1.1)
A 		5.2
(-3)
A 		7.4
(-2.5)
A 		34
(3)
A 		6.2
(-2.8)
A 		29
C 4.1
(-3)
A 		43.3
(3)
A 		24.5
(0.1)
A 		20.6
(-0.5)
A 		36.4
(1.9)
A 		30.7
(1.1)
A 		39
avr 6.7
(-3) 		26.2
(2.2) 		26.1
(2.2) 		17.6
(-0.1) 		29.3
(3) 		18.5
(0.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.1
(-3)
A 		3.1
(-2.1)
A 		13.8
(3)
A 		6.4
(-0.5)
A 		13
B 7.7
(0.8)
A 		11.9
(3)
A 		7.4
(0.7)
A 		0.4
(-3)
A 		12
C 7.8
(3)
A 		7.5
(1.6)
A 		7
(-0.7)
A 		6.5
(-3)
A 		1
avr 5.5
(-1.7) 		7.5
(0.7) 		9.4
(3) 		4.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-3)
A 		3.7
(-1.4)
A 		10.6
(3)
A 		6.3
(0.3)
A 		5.3
(-0.4)
A 		4.6
(-0.8)
A 		9
B 3.3
(-2)
A 		8.3
(0.4)
A 		1.3
(-3)
A 		2
(-2.7)
A 		13.8
(3)
A 		2.3
(-2.5)
A 		13
C 1.5
(-3)
A 		13.2
(3)
A 		6.2
(-0.6)
A 		4.1
(-1.7)
A 		11.8
(2.3)
A 		10.3
(1.5)
A 		12
avr 2
(-3) 		8.4
(1.6) 		6
(-0.1) 		4.1
(-1.5) 		10.3
(3) 		5.7
(-0.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180266_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15909
Sequence Type Exemplar sequence
Representative Public ID C03A7.2 NCBI
Target Description C03A7.2 /REP_DB=WormBase Gene ID /WP=CE07860 /TR=O16508 /GB=AAB65999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071989(11), NM_075208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071989 NCBI Caenorhabditis elegans C03A7.2 (C03A7.2) mRNA, complete cds. 11/11 A 
NM_075208 NCBI Caenorhabditis elegans ZK262.8 (ZK262.8) mRNA, complete cds. 11/11 A 
SNAP00000035288 ENSEMBL cdna:SNAP chromosome:CEL140:V:5182812:5183529:1 11/11 None
GENEFINDER00000035302 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5181724:5183529:1 11/11 None
C03A7.2 ENSEMBL cdna:known chromosome:CEL140:V:5181724:5183529:1 gene:C03A7.2 11/11 A 
ZK262.8 ENSEMBL cdna:known chromosome:CEL140:V:18440806:18443028:1 gene:ZK262.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl C03A7.2
ZK262.8
Entrez Gene 182134 Entrez gene
191270 Entrez gene
SwissProt O16508 EMBL-EBI
Q9U1N8 EMBL-EBI
WormBase CE07860 Wormbase
CE20429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63421 Hypothetical protein ZK262.8 [Caenorhabditis elegans] ref|NP_507609.1| ZK262.8 [Caenorhabditis elegans] 0.0
blast AAB65999 Hypothetical protein C03A7.2 [Caenorhabditis elegans] ref|NP_504390.1| C03A7.2 [Caenorhabditis elegans] 1.0E-175
blast AAB65999 Hypothetical protein C03A7.2 [Caenorhabditis elegans] ref|NP_504390.1| C03A7.2 [Caenorhabditis elegans] 1.0E-125
blast CAB63421 Hypothetical protein ZK262.8 [Caenorhabditis elegans] ref|NP_507609.1| ZK262.8 [Caenorhabditis elegans] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:180266_S_AT
cccttgacaacatccgcggaatggttagccgactggaagagaagattgctgggagccacg
ccacgctgatccaggacttggaccatctgaagagagctggagaagatcatcgtgtgacca
tcggcaacatcaacacccgcgtttcccgcaactcgtgcctcgacgtctctgcacatgcct
actcgatctttggaaacaatggtctggtgaatgccaagatcattgttgaagccacgaccg
cgtacggccgcgagctctcgatcatcacgatcgacacagccggctactactcgcgtacgg
gctttacaaagacgagtagggaggcgagaacggagagtccgaggatgagcaaaataagag
aagatgttgttagatgggcgagagggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTTGACAACATCCGCGGAATGGT 77 259 383 Antisense
TCCGCGGAATGGTTAGCCGACTGGA 378 593 395 Antisense
CCACGCTGATCCAGGACTTGGACCA 487 261 443 Antisense
TCCAGGACTTGGACCATCTGAAGAG 388 589 452 Antisense
ATCATCGTGTGACCATCGGCAACAT 93 31 488 Antisense
TGTGACCATCGGCAACATCAACACC 148 557 495 Antisense
CACATGCCTACTCGATCTTTGGAAA 426 195 554 Antisense
GATCTTTGGAAACAATGGTCTGGTG 496 415 567 Antisense
AGATCATTGTTGAAGCCACGACCGC 367 65 599 Antisense
GACGAGTAGGGAGGCGAGAACGGAG 190 375 693 Antisense
GATGTTGTTAGATGGGCGAGAGGGC 629 407 745 Antisense
Sequence Source Affymetrix Proprietary Database