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[180265_at]

Description C03A7.2 /REP_DB=WormBase Gene ID /WP=CE07860 /TR=O16508 /GB=AAB65999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 1.2
(-3)
A 		38.4
(1.1)
A 		5.2
(-2.6)
A 		56.1
(3)
A 		55
B 2.6
(-3)
A 		12.4
(-1.4)
A 		38.3
(3)
A 		2.7
(-3)
A 		36
C 22.5
(0.2)
A 		1.7
(-3)
A 		1.6
(-3)
A 		41.3
(3)
A 		40
avr 8.8
(-3) 		17.5
(-0.9) 		15
(-1.5) 		33.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 28.8
(2)
A 		23.2
(0.8)
A 		33.9
(3)
A 		5.3
(-2.8)
A 		4.2
(-3)
A 		20.2
(0.2)
A 		30
B 19.3
(1.2)
A 		8.5
(-1.4)
A 		26.6
(3)
A 		1.8
(-3)
A 		11.5
(-0.7)
A 		21.4
(1.7)
A 		25
C 1.2
(-3)
A 		35.9
(2.1)
A 		16.7
(-0.7)
A 		36.6
(2.2)
A 		1
(-3)
A 		42.2
(3)
A 		41
avr 16.4
(-0.1) 		22.5
(1.5) 		25.7
(2.4) 		14.6
(-0.6) 		5.6
(-3) 		27.9
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		8.3
(3)
A 		1.4
(-2.2)
A 		8.2
(2.9)
A 		8
B 0.8
(-2.9)
A 		3.1
(-1.2)
A 		8.9
(3)
A 		0.6
(-3)
A 		8
C 7.4
(3)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		7
(2.7)
A 		7
avr 2.9
(-3) 		4
(-0.3) 		3.6
(-1.3) 		5.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.3
(0.5)
A 		8.2
(3)
A 		7.4
(2.3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		4.9
(0.1)
A 		7
B 6.7
(2)
A 		2.8
(-1.2)
A 		6.4
(1.7)
A 		0.5
(-3)
A 		4.7
(0.4)
A 		8
(3)
A 		8
C 0.5
(-2.9)
A 		10.9
(1.6)
A 		4.2
(-1.3)
A 		7.4
(0.1)
A 		0.3
(-3)
A 		14.1
(3)
A 		14
avr 4.2
(-1.2) 		7.3
(1.5) 		6
(0.4) 		3.1
(-2.1) 		2.1
(-3) 		9
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15909
Sequence Type Exemplar sequence
Representative Public ID C03A7.2 NCBI
Target Description C03A7.2 /REP_DB=WormBase Gene ID /WP=CE07860 /TR=O16508 /GB=AAB65999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071989 NCBI Caenorhabditis elegans C03A7.2 (C03A7.2) mRNA, complete cds. 11/11 A 
SNAP00000035288 ENSEMBL cdna:SNAP chromosome:CEL140:V:5182812:5183529:1 11/11 None
GENEFINDER00000035302 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5181724:5183529:1 11/11 None
C03A7.2 ENSEMBL cdna:known chromosome:CEL140:V:5181724:5183529:1 gene:C03A7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C03A7.2
Entrez Gene 182134 Entrez gene
SwissProt O16508 EMBL-EBI
WormBase CE07860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65999 Hypothetical protein C03A7.2 [Caenorhabditis elegans] ref|NP_504390.1| C03A7.2 [Caenorhabditis elegans] 1.0E-175
blast AAB65999 Hypothetical protein C03A7.2 [Caenorhabditis elegans] ref|NP_504390.1| C03A7.2 [Caenorhabditis elegans] 1.0E-125
blast CAB63421 Hypothetical protein ZK262.8 [Caenorhabditis elegans] ref|NP_507609.1| ZK262.8 [Caenorhabditis elegans] 1.0E-124
blast CAB63421 Hypothetical protein ZK262.8 [Caenorhabditis elegans] ref|NP_507609.1| ZK262.8 [Caenorhabditis elegans] 9.0E-82
blast AAF60391 Hypothetical protein W09B7.2 [Caenorhabditis elegans] gb|AAK84511.1| Hypothetical protein F07B7.2 [Caenorhabditis elegans] ref|NP_505270.1| W09B7.2 [Caenorhabditis elegans] ref|NP_505284.1| F07B7.2 [Caenorhabditis elegans] 1.0E-58
Sequence
Target Sequence 
>C. ELEGANS:180265_AT
ctactcgcgtacgggctttacaaagacgagtagggaggcgagaacggagagtccgaggat
gagcaaaataagagaagatgttgttagatgggcgagagggcaaggtactgagcggtgcta
tgagtaccgggcaagttggatggattactttccattccaatgcttgctcggatgcgcatg
tgtgtcctctcgtaccccaccatccgcgcaccatgataactccgagccctgcgaaactcg
tcgaatggcgcagctctgcacgatttctactatgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTCGCGTACGGGCTTTACAAAG 115 225 669 Antisense
GATGGGCGAGAGGGCAAGGTACTGA 375 407 755 Antisense
GAGGGCAAGGTACTGAGCGGTGCTA 557 401 764 Antisense
GAGCGGTGCTATGAGTACCGGGCAA 146 385 778 Antisense
GTACCGGGCAAGTTGGATGGATTAC 178 457 792 Antisense
GATTACTTTCCATTCCAATGCTTGC 201 431 811 Antisense
TCCAATGCTTGCTCGGATGCGCATG 233 587 824 Antisense
TGCTTGCTCGGATGCGCATGTGTGT 610 579 829 Antisense
GCCCTGCGAAACTCGTCGAATGGCG 107 285 894 Antisense
TCGAATGGCGCAGCTCTGCACGATT 327 601 909 Antisense
CTCTGCACGATTTCTACTATGAAAT 465 231 922 Antisense
Sequence Source Affymetrix Proprietary Database