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[180264_at]

Description D2092.6 /REP_DB=WormBase Gene ID /WP=CE09105 /TR=P91192 /GB=AAB42226.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 63.8
(3)
P 		24.5
(-3)
A 		33.3
(-1.7)
A 		60.6
(2.5)
A 		39
B 52.1
(2.7)
M 		47.9
(2)
P 		19
(-3)
A 		53.6
(3)
P 		35
C 116.8
(3)
P 		33.6
(-2.2)
A 		20.9
(-3)
A 		83.8
(0.9)
P 		96
avr 77.6
(3) 		35.3
(-1.8) 		24.4
(-3) 		66
(1.7) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 67.7
(2.8)
A 		69.4
(3)
P 		31.6
(-0.6)
A 		27.9
(-0.9)
A 		13.9
(-2.2)
A 		5.9
(-3)
A 		64
B 74
(3)
P 		59.8
(1.6)
P 		34.8
(-0.7)
A 		16.3
(-2.5)
A 		11
(-3)
A 		32.2
(-1)
A 		63
C 70.7
(2.9)
P 		71.4
(3)
P 		19.1
(-3)
A 		49
(0.4)
A 		20.3
(-2.9)
A 		44.6
(-0.1)
P 		52
avr 70.8
(3) 		66.9
(2.6) 		28.5
(-1.6) 		31.1
(-1.3) 		15.1
(-3) 		27.6
(-1.7) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 23.2
(3)
P 		5.3
(-3)
A 		8.7
(-1.9)
A 		8.9
(-1.8)
A 		18
B 16.6
(3)
M 		11.8
(0.6)
P 		4.4
(-3)
A 		11.4
(0.4)
P 		12
C 38.7
(3)
P 		9.7
(-2.5)
A 		7.3
(-3)
A 		14.1
(-1.7)
P 		31
avr 26.2
(3) 		8.9
(-2.4) 		6.8
(-3) 		11.5
(-1.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.5
(-0.1)
A 		24.7
(3)
P 		6.9
(-1.6)
A 		7.1
(-1.5)
A 		4.2
(-2.3)
A 		1.4
(-3)
A 		23
B 25.7
(3)
P 		19.9
(1.4)
P 		8.5
(-1.8)
A 		4.3
(-3)
A 		4.5
(-2.9)
A 		12
(-0.8)
A 		21
C 26.2
(3)
P 		21.8
(1.8)
P 		4.9
(-3)
A 		9.9
(-1.6)
A 		6.6
(-2.5)
A 		14.9
(-0.2)
P 		21
avr 21.5
(2.8) 		22.1
(3) 		6.8
(-2.4) 		7.1
(-2.3) 		5.1
(-3) 		9.4
(-1.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2068
Sequence Type Exemplar sequence
Representative Public ID D2092.6 NCBI
Target Description D2092.6 /REP_DB=WormBase Gene ID /WP=CE09105 /TR=P91192 /GB=AAB42226.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059500 NCBI Caenorhabditis elegans D2092.6 (D2092.6) mRNA, complete cds. 11/11 None
SNAP00000030842 ENSEMBL cdna:SNAP chromosome:CEL140:I:6605704:6606987:1 11/11 None
GENEFINDER00000030857 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6605704:6606987:1 11/11 None
D2092.6 ENSEMBL cdna:known chromosome:CEL140:I:6605704:6606987:1 gene:D2092.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6605632-6606916(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2092.6
Entrez Gene 183964 Entrez gene
SwissProt P91192 EMBL-EBI
WormBase CE09105 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42226 Hypothetical protein D2092.6 [Caenorhabditis elegans] ref|NP_491901.1| D2092.6 [Caenorhabditis elegans] 1.0E-143
blast CAE67212 Hypothetical protein CBG12648 [Caenorhabditis briggsae] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:180264_AT
aatccaatttatgcaacaccaatacgtaaaaagattacatcaaaagcatcagtggagcct
ccaattattgaagaattctctgaagaagtaccaagatatgtgagaccattgaaaacattt
aaaagttctgaagaaattataatagaagaaaaggaaaaagaaaataagaaggaagaaatg
aaagttattccagttattgatatgagtacagaagtcgaattttcatcaaaagttgaaaga
tctattggaaaattagcacgagaagattctcttacatctcttttaaaacgacaactttca
tcaaaaaatcgtcgaaaaaaccgagaagaattgcctgaatatgttgagccaaaggatcca
attatgaaggaattgcaagaatttctgaaaattgaaccgaaaagttcagaagaaaactca
aattctcagaattctacattaacatcaattgagaaagaacgaaaggaggaatcagaagaa
aaggaaaaagctgtgcaggcagatgagcatcgtttgattgttagaggttggcaggaatta
ctgaaatcatcttcatcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCAATTTATGCAACACCAATAC 427 167 379 Antisense
TCAAAAGCATCAGTGGAGCCTCCAA 4 631 418 Antisense
GAAGTACCAAGATATGTGAGACCAT 524 335 463 Antisense
GAGTACAGAAGTCGAATTTTCATCA 324 399 582 Antisense
AGAAGATTCTCTTACATCTCTTTTA 186 75 639 Antisense
TACATCTCTTTTAAAACGACAACTT 673 643 651 Antisense
GTTGAGCCAAAGGATCCAATTATGA 201 437 721 Antisense
ATTCTCAGAATTCTACATTAACATC 704 9 800 Antisense
GCTGTGCAGGCAGATGAGCATCGTT 250 295 868 Antisense
GCATCGTTTGATTGTTAGAGGTTGG 472 303 885 Antisense
ATTACTGAAATCATCTTCATCTTCG 146 13 915 Antisense
Sequence Source Affymetrix Proprietary Database