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[180263_s_at]

Description C35E7.5 /REP_DB=WormBase Gene ID /WP=CE17518 /TR=O61771 /GB=AAC17521.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 10.7
(-2.7)
A 		10.2
(-2.7)
A 		5.5
(-3)
A 		106.7
(3)
A 		101
B 12.7
(-2.6)
A 		21.2
(-2.2)
A 		4.9
(-3)
A 		122.3
(3)
A 		117
C 19.2
(3)
A 		19.2
(3)
A 		7.5
(-3)
A 		14
(0.3)
A 		12
avr 14.2
(-2.3) 		16.9
(-2.1) 		6
(-3) 		81
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 789
1 2 3 4 5 6 range
A 116.8
(-2.2)
A 		8.2
(-3)
A 		20.3
(-2.9)
A 		14
(-3)
A 		21.7
(-2.9)
A 		792.3
(3)
P 		784
B 94.5
(-2.2)
A 		16.1
(-2.9)
A 		36.4
(-2.7)
A 		3.1
(-3)
A 		46.8
(-2.6)
A 		709.3
(3)
P 		706
C 64.4
(-2.5)
M 		11.7
(-3)
A 		9.3
(-3)
A 		11.9
(-3)
A 		53.2
(-2.6)
A 		722
(3)
P 		713
avr 91.9
(-2.3) 		12
(-3) 		22
(-2.9) 		9.7
(-3) 		40.6
(-2.7) 		741.2
(3) 		732
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 3.9
(-2)
A 		2.2
(-2.7)
A 		1.5
(-3)
A 		15.6
(3)
A 		14
B 4
(-2.3)
A 		5.2
(-2)
A 		1.1
(-3)
A 		26.1
(3)
A 		25
C 6.3
(3)
A 		5.5
(1.8)
A 		2.6
(-2.7)
A 		2.4
(-3)
A 		4
avr 4.7
(-1.6) 		4.3
(-1.8) 		1.7
(-3) 		14.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 21.5
(-2.4)
A 		2.9
(-3)
A 		4.4
(-3)
A 		3.5
(-3)
A 		6.6
(-2.9)
A 		192.9
(3)
P 		190
B 32.9
(-2.3)
A 		5.3
(-2.9)
A 		8.8
(-2.8)
A 		0.8
(-3)
A 		19
(-2.6)
A 		264.5
(3)
P 		264
C 23.9
(-2.5)
M 		3.6
(-3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		17.2
(-2.6)
A 		241.7
(3)
P 		239
avr 26.1
(-2.4) 		3.9
(-3) 		5.2
(-2.9) 		2.2
(-3) 		14.3
(-2.7) 		233
(3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180263_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1869
Sequence Type Exemplar sequence
Representative Public ID C35E7.5 NCBI
Target Description C35E7.5 /REP_DB=WormBase Gene ID /WP=CE17518 /TR=O61771 /GB=AAC17521.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060429 NCBI Caenorhabditis elegans C35E7.5a (C35E7.5) mRNA, complete cds. 11/11 None
SNAP00000013373 ENSEMBL cdna:SNAP chromosome:CEL140:I:10831502:10836366:1 11/11 None
GENEFINDER00000013384 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10831502:10836366:1 11/11 None
C35E7.5a ENSEMBL cdna:known chromosome:CEL140:I:10831479:10836575:1 gene:C35E7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172989 2 1 NM_060429 180263_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10831432-10836297(+) 95.14 100.0
Public Domain and Genome References
Ensembl C35E7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84852 Hypothetical protein C35E7.5b [Caenorhabditis elegans] ref|NP_871885.1| C35E7.5b [Caenorhabditis elegans] 0.0
blast AAC17521 Hypothetical protein C35E7.5a [Caenorhabditis elegans] ref|NP_492830.1| C35E7.5a [Caenorhabditis elegans] 0.0
blast CAE63900 Hypothetical protein CBG08471 [Caenorhabditis briggsae] 2.0E-63
Sequence
Target Sequence 
>C. ELEGANS:180263_S_AT
gattttgaatcgactgctactgccgtggagccattggactttgaagaaagtctttctatg
gatgttactcaacaaaacgaatcgtttgagggcgtggagcatgtcgaagctgaagatgac
acacaatccactacaactgctcttgaaccatctgatattgaagacaactgtgacgttgaa
tcaactaccactgctgtggaaccattggactttgaagacgataattctctggatatcacc
caagagagcgattctcttgagctcatggagcatgtcgaagctgaagatgacacaaaatct
accacaactgctcttgaaccttctgatattgaagataatgacttggagcttgtctctgat
ctatctgatgataatagtagtatttcaatgatctcttccacatccactgctattgaattc
tcaatcgccgacgactcgggaagttcaatgggaagtgatatttcctatttggatagagat
atggattttgcttctgataaagaatctctggtttctgaatcgaattatcaggattttatg
gatccaactattcatgcttcattcactgcgtcgcaaatcgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTGAATCGACTGCTACTGCCG 414 429 3181 Antisense
CTACTGCCGTGGAGCCATTGGACTT 592 221 3197 Antisense
CAACTGCTCTTGAACCATCTGATAT 549 187 3314 Antisense
GTTGAATCAACTACCACTGCTGTGG 331 439 3355 Antisense
GACACAAAATCTACCACAACTGCTC 104 367 3469 Antisense
ACAACTGCTCTTGAACCTTCTGATA 415 113 3484 Antisense
TGGAGCTTGTCTCTGATCTATCTGA 479 549 3524 Antisense
GTATTTCAATGATCTCTTCCACATC 151 453 3560 Antisense
TCTTCCACATCCACTGCTATTGAAT 615 617 3574 Antisense
GGATCCAACTATTCATGCTTCATTC 102 513 3720 Antisense
CATTCACTGCGTCGCAAATCGCCGA 709 215 3740 Antisense
Sequence Source Affymetrix Proprietary Database