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[180259_at]

Description F10G2.6 /REP_DB=WormBase Gene ID /WP=CE09333 /TR=Q22953 /GB=AAG24060.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 03      6grp_cgc > 89      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 18.7
(-1.8)
A 		4.5
(-2.8)
A 		2
(-3)
A 		89
(3)
P 		87
B 5.9
(-2.7)
A 		23.4
(2.2)
A 		4.8
(-3)
A 		26.1
(3)
P 		21
C 15
(-2.4)
A 		5.5
(-2.9)
A 		3.9
(-3)
A 		107.8
(3)
P 		104
avr 13.2
(-2.2) 		11.1
(-2.4) 		3.6
(-3) 		74.3
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.2
(-3)
A 		5.7
(-2.5)
A 		20
(0.5)
A 		4.1
(-2.8)
A 		32.3
(3)
A 		20.8
(0.6)
A 		29
B 3.1
(-2.7)
A 		4.2
(-2.4)
A 		2
(-3)
A 		2.7
(-2.8)
A 		19.4
(1.9)
A 		23.4
(3)
A 		21
C 2.1
(-3)
A 		31.4
(3)
A 		3.6
(-2.7)
A 		5
(-2.4)
A 		27.1
(2.1)
A 		10.9
(-1.2)
A 		29
avr 2.8
(-3) 		13.8
(-0.2) 		8.5
(-1.5) 		3.9
(-2.7) 		26.3
(3) 		18.4
(1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.8
(0)
A 		1
(-2.8)
A 		0.5
(-3)
A 		13
(3)
P 		13
B 1.9
(-2)
A 		5.8
(3)
A 		1.1
(-3)
A 		5.6
(2.7)
P 		5
C 5
(-1.7)
A 		1.6
(-2.9)
A 		1.3
(-3)
A 		18.2
(3)
P 		17
avr 4.6
(-1.1) 		2.8
(-2) 		1
(-3) 		12.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2
(-2.1)
A 		4.4
(-0.5)
A 		1
(-2.7)
A 		9.7
(3)
A 		5.1
(-0)
A 		9
B 1.1
(-2.6)
A 		1.4
(-2.3)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		7.9
(2.4)
A 		8.7
(3)
A 		8
C 0.8
(-3)
A 		9.6
(3)
A 		0.9
(-2.9)
A 		1
(-2.9)
A 		8.8
(2.5)
A 		3.7
(-1)
A 		9
avr 0.8
(-3) 		4.3
(-0.4) 		1.9
(-2.2) 		0.9
(-2.9) 		8.8
(3) 		5.8
(0.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11868
Sequence Type Exemplar sequence
Representative Public ID F10G2.6 NCBI
Target Description F10G2.6 /REP_DB=WormBase Gene ID /WP=CE09333 /TR=Q22953 /GB=AAG24060.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028611, NM_001028612
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F10G2.6.2 ENSEMBL cdna:known chromosome:CEL140:V:7326631:7327958:-1 gene:F10G2.6 None
GENEFINDER00000010648 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7318126:7327978:-1 None
SNAP00000010636 ENSEMBL cdna:SNAP chromosome:CEL140:V:7327268:7327978:-1 None
NM_001028612 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-92) (srx-92) mRNA, complete cds. None
F10G2.6.1 ENSEMBL cdna:known chromosome:CEL140:V:7326631:7327463:-1 gene:F10G2.6 None
NM_001028611 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-92) (srx-92) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7326602-7327979(-) 96.46 100.0
Public Domain and Genome References
Ensembl F10G2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023783 Serpentine Receptor, class X family member (srx-92) [Caenorhabditis elegans] gb|AAX22289.1| Serpentine receptor, class x protein 92, isoform b [Caenorhabditis elegans] 0.0
blast NP_504862 F07G11.9 [Caenorhabditis elegans] gb|AAG24054.1| Hypothetical protein F07G11.9 [Caenorhabditis elegans] 0.0
blast T29861 hypothetical protein F10G2.5 - Caenorhabditis elegans 0.0
blast NP_504806 T01C4.1 [Caenorhabditis elegans] gb|AAB09177.1| Hypothetical protein T01C4.1 [Caenorhabditis elegans] 0.0
blast CAA18353 Hypothetical protein H12C20.5 [Caenorhabditis elegans] ref|NP_505938.1| Serpentine Receptor, class X family member (srx-90) [Caenorhabditis elegans] 1.0E-131
blast AAC17662 Serpentine receptor, class x protein 93 [Caenorhabditis elegans] ref|NP_504016.2| Serpentine Receptor, class X family member (srx-93) [Caenorhabditis elegans] 1.0E-127
blast NP_001023783 Serpentine Receptor, class X family member (srx-92) [Caenorhabditis elegans] gb|AAX22289.1| Serpentine receptor, class x protein 92, isoform b [Caenorhabditis elegans] 5.0E-75
blast NP_001023782 Serpentine Receptor, class X family member (srx-92) [Caenorhabditis elegans] gb|AAG24060.2| Serpentine receptor, class x protein 92, isoform a [Caenorhabditis elegans] 5.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.2E-36
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.6E-111
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.8E-11
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-6
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 6.8E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-12
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.2E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.7E-10
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.8E-12
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 3.2E-13
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.9E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 4.9E-6
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 5.5E-7
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 2.0
Pfam IPR010264 EMBL-EBI Plant self-incompatibility S1 1.8E-11
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.6E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023783.1 7 15-37,50-72,87-109,121-143,189-206,227-249,259-281
NP_001023782.1 3 5-22,43-65,75-97
F10G2.6.1 3 5-22,43-65,75-97
F10G2.6.2 3 5-22,43-65,75-97
GENEFINDER00000010648 8 15-37,50-72,87-109,121-143,189-206,227-249,259-281,331-353
Sequence
Target Sequence 
>C. ELEGANS:180259_AT
gacaattttttcgctatttaacattacaatcattttggtttttatctacatttttaggat
cgcgaaaaaaatatatgaactgttgccagagtccggtaacacttctcctggatgtaattc
aactgaaaatgctcttgaaatgatcaaatgtactttcataatgatggcgattttgaattt
tattacttttttgaagatattacactcttataaaaagtcaaggaaaactgaaacagttgt
gggagcaagaaaaagaatgtgtaaaaatattttgtgttttctacaaacaattctccaaga
ctcactatattttattgatatgacttttactttcaaactgagttcctggagcactaaccg
tatttggacgtatttcagtggaacatttgtttgggaatgtttacactcttttgatgggta
tgcacatcttatatttcctattaattttatcaaacttcagattcatcatgataattttca
acgaaagactttcatttttgaaaacaaaagtgaaacatataaatatactcccaatagtcg
gtggacatttacgacaacgacttgtatcactaacaacattatctcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATTTTTTCGCTATTTAACATT 520 363 378 Antisense
TGAACTGTTGCCAGAGTCCGGTAAC 596 573 453 Antisense
TCCGGTAACACTTCTCCTGGATGTA 253 595 469 Antisense
AACAATTCTCCAAGACTCACTATAT 175 135 663 Antisense
ACTGAGTTCCTGGAGCACTAACCGT 456 95 714 Antisense
GGAGCACTAACCGTATTTGGACGTA 502 519 725 Antisense
GTTTACACTCTTTTGATGGGTATGC 20 451 776 Antisense
GGGTATGCACATCTTATATTTCCTA 308 497 793 Antisense
TATACTCCCAATAGTCGGTGGACAT 540 659 901 Antisense
GGTGGACATTTACGACAACGACTTG 185 497 917 Antisense
GTATCACTAACAACATTATCTCATT 165 455 941 Antisense
Sequence Source Affymetrix Proprietary Database