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[180257_at]

Description F29G9.7 /REP_DB=WormBase Gene ID /WP=CE27377 /TR=O16372 /GB=AAK68353.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 34      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 15.3
(-3)
A 		60.1
(3)
A 		50.2
(1.7)
A 		49.6
(1.6)
A 		45
B 25.1
(-3)
A 		80.5
(3)
A 		57.7
(0.5)
A 		50.3
(-0.3)
A 		55
C 28.1
(-2.7)
A 		59.3
(3)
A 		26.3
(-3)
A 		46
(0.6)
A 		33
avr 22.8
(-3) 		66.6
(3) 		44.7
(0) 		48.6
(0.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 84.7
(3)
A 		6.1
(-3)
A 		11.5
(-2.6)
A 		28.7
(-1.3)
A 		33.8
(-0.9)
A 		42.6
(-0.2)
A 		79
B 8.4
(-3)
A 		47.2
(1.9)
A 		31.2
(-0.1)
A 		39.2
(0.9)
A 		33.8
(0.2)
A 		56.3
(3)
A 		48
C 61.8
(1.8)
A 		38.1
(-0.2)
A 		5.4
(-3)
A 		44.5
(0.4)
A 		14
(-2.3)
A 		75.4
(3)
A 		70
avr 51.6
(2.1) 		30.5
(-0.9) 		16
(-3) 		37.5
(0.1) 		27.2
(-1.4) 		58.1
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5.6
(-3)
A 		13.1
(3)
A 		13.1
(3)
A 		7.3
(-1.6)
A 		8
B 8
(-3)
A 		19.9
(3)
A 		13.4
(-0.3)
A 		10.7
(-1.6)
A 		12
C 9.3
(-2)
A 		17.1
(3)
A 		9.2
(-2.1)
A 		7.8
(-3)
A 		9
avr 7.6
(-3) 		16.7
(3) 		11.9
(-0.2) 		8.6
(-2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 15.6
(3)
A 		2.2
(-3)
A 		2.5
(-2.9)
A 		7.3
(-0.7)
A 		10.2
(0.6)
A 		10.4
(0.7)
A 		13
B 2.9
(-3)
A 		15.7
(1.2)
A 		7.6
(-1.4)
A 		10.4
(-0.5)
A 		13.7
(0.6)
A 		21
(3)
A 		18
C 22.9
(2.4)
A 		11.6
(-0.4)
A 		1.4
(-3)
A 		8.9
(-1.1)
A 		4.5
(-2.2)
A 		25.3
(3)
A 		24
avr 13.8
(1) 		9.8
(-0.6) 		3.8
(-3) 		8.9
(-1) 		9.5
(-0.7) 		18.9
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11865
Sequence Type Exemplar sequence
Representative Public ID F29G9.7 NCBI
Target Description F29G9.7 /REP_DB=WormBase Gene ID /WP=CE27377 /TR=O16372 /GB=AAK68353.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072161
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000287 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6029107:6037643:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072160 5/11 Cross Hyb Matching Probes A 
SNAP00000000277 1/11 Cross Hyb Matching Probes None
F29G9.6 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6036845-6039154(-) 98.5 98.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65901 Dehydrogenases, short chain protein 17 [Caenorhabditis elegans] ref|NP_504561.1| DeHydrogenases, Short chain family member (dhs-17) [Caenorhabditis elegans] 1.0E-155
blast CAE64525 Hypothetical protein CBG09263 [Caenorhabditis briggsae] 1.0E-141
blast T31804 hypothetical protein F29G9.7 - Caenorhabditis elegans 1.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-6
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.9E-16
Sequence
Target Sequence 
>C. ELEGANS:180257_AT
agaacgtagtgaccatgcactctccactcaacctcctcctccaatcaaatttgtcattct
ttcctactcacccagtcaaactgtgcaatggaaaccctcagttgtctcgtctgtaatttg
tagaaaaaaaaggcaggaacaaccgacgttcgaacggctcctgcagctccctcccccagc
cttcgccaacattctcaaaattcttggcgctgttaaaatattagaattgtcccagttgtc
aaagagaatgtgtacgttgatccaggctgctaacatcacatttgaccacatcatgattgc
attttccgaatcttctgctttgccgatcataccaaaatcagttgctatgctgcaaacttt
gaatcttgcgtaccagcctgccgccggtatttcttctacattcagttgtattatgtgtcg
ggccccccaaaatggagagctctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACGTAGTGACCATGCACTCTCC 522 73 801 Antisense
CTCCTCCTCCAATCAAATTTGTCAT 3 235 833 Antisense
TCCTACTCACCCAGTCAAACTGTGC 384 591 862 Antisense
CAATGGAAACCCTCAGTTGTCTCGT 44 183 886 Antisense
GAATGTGTACGTTGATCCAGGCTGC 369 331 1046 Antisense
GACCACATCATGATTGCATTTTCCG 526 383 1084 Antisense
GCATTTTCCGAATCTTCTGCTTTGC 405 307 1099 Antisense
CTTCTGCTTTGCCGATCATACCAAA 249 221 1112 Antisense
ACTTTGAATCTTGCGTACCAGCCTG 143 101 1156 Antisense
GCCGGTATTTCTTCTACATTCAGTT 113 281 1183 Antisense
GCCCCCCAAAATGGAGAGCTCTCTT 13 287 1222 Antisense
Sequence Source Affymetrix Proprietary Database