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[180256_at]

Description K07E8.3 /REP_DB=WormBase Gene ID /WP=CE11892 /TR=O16689 /GB=AAB66149.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 42      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 25      6grp_total > 31      4grp_total > 61      6grp_highest_sub > 03      6grp_cgc > 73      6grp_high1_sub > 02_03      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4919
1 2 3 4 range
A 4525.9
(2.8)
P 		4678.1
(3)
P 		2933.1
(0.7)
P 		120.8
(-3)
P 		4557
B 4696.7
(3)
P 		4253
(2.4)
P 		3360.5
(1.3)
P 		110.1
(-3)
P 		4587
C 5029.2
(3)
P 		4174.5
(2)
P 		3186.8
(0.7)
P 		116.2
(-3)
P 		4913
avr 4750.6
(3) 		4368.5
(2.5) 		3160.1
(0.9) 		115.7
(-3) 		4635

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4752
1 2 3 4 5 6 range
A 4210.6
(0.6)
P 		5789.2
(2.8)
P 		5954.8
(3)
P 		5144.1
(1.9)
P 		3684.6
(-0.2)
P 		1649
(-3)
P 		4306
B 3561
(-0.6)
P 		5387.9
(1.7)
P 		6401
(3)
P 		4558.7
(0.6)
P 		3889.9
(-0.2)
P 		1718.6
(-3)
P 		4682
C 3540.9
(-0.7)
P 		5835.9
(2.4)
P 		6267.3
(3)
P 		5625.4
(2.1)
P 		3589.1
(-0.6)
P 		1825.4
(-3)
P 		4442
avr 3770.8
(-0.3) 		5671
(2.3) 		6207.7
(3) 		5109.4
(1.5) 		3721.2
(-0.3) 		1731
(-3) 		4477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1647
1 2 3 4 range
A 1647.9
(3)
P 		1015.5
(0.7)
P 		766.8
(-0.2)
P 		17.7
(-3)
P 		1630
B 1497.7
(3)
P 		1050.4
(1.2)
P 		778.7
(0.1)
P 		23.5
(-3)
P 		1474
C 1664.8
(3)
P 		1200.2
(1.3)
P 		1110.7
(1)
P 		19.6
(-3)
P 		1645
avr 1603.5
(3) 		1088.7
(1) 		885.4
(0.3) 		20.3
(-3) 		1583

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1657
1 2 3 4 5 6 range
A 776.2
(-1.6)
P 		2058.9
(3)
P 		1296.8
(0.2)
P 		1304.7
(0.3)
P 		1111.9
(-0.4)
P 		401.5
(-3)
P 		1657
B 1239
(0.1)
P 		1793.4
(3)
P 		1554.4
(1.8)
P 		1207.4
(-0.1)
P 		1580.4
(1.9)
P 		640.9
(-3)
P 		1153
C 1312.5
(0.6)
P 		1780.7
(3)
P 		1595.1
(2)
P 		1131.3
(-0.3)
P 		1161.4
(-0.2)
P 		611.1
(-3)
P 		1170
avr 1109.2
(-0.5) 		1877.7
(3) 		1482.1
(1.2) 		1214.5
(0) 		1284.6
(0.3) 		551.2
(-3) 		1327
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4151
Sequence Type Exemplar sequence
Representative Public ID K07E8.3 NCBI
Target Description K07E8.3 /REP_DB=WormBase Gene ID /WP=CE11892 /TR=O16689 /GB=AAB66149.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061380 NCBI Caenorhabditis elegans K07E8.3 (K07E8.3) mRNA, complete cds. 11/11 None
SNAP00000018452 ENSEMBL cdna:SNAP chromosome:CEL140:II:658708:659668:1 11/11 None
GENEFINDER00000018458 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:658708:662982:1 11/11 None
K07E8.3 ENSEMBL cdna:known chromosome:CEL140:II:658675:659873:1 gene:K07E8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:658707-659668(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-24
Ensembl K07E8.3
Entrez Gene 173457 Entrez gene
SwissProt O16689 EMBL-EBI
WormBase CE29512 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66149 Hypothetical protein K07E8.3 [Caenorhabditis elegans] ref|NP_493781.1| K07E8.3 [Caenorhabditis elegans] 1.0E-140
blast AAB66149 Hypothetical protein K07E8.3 [Caenorhabditis elegans] ref|NP_493781.1| K07E8.3 [Caenorhabditis elegans] 1.0E-130
blast NP_509377 C17H11.3 [Caenorhabditis elegans] 3.0E-41
blast AAG00002 Hypothetical protein R03H10.6 [Caenorhabditis elegans] ref|NP_494733.2| R03H10.6 [Caenorhabditis elegans] 1.0E-25
blast AAG00002 Hypothetical protein R03H10.6 [Caenorhabditis elegans] ref|NP_494733.2| R03H10.6 [Caenorhabditis elegans] 7.0E-24
blast AAG00003 Hypothetical protein R03H10.7 [Caenorhabditis elegans] ref|NP_494734.1| R03H10.7 [Caenorhabditis elegans] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:180256_AT
aatggaattcatttcctgctcaccgactcgttaggatgctcgattaaatgtattgtaaca
gtagaagcagttgtaaaacattgcaaagatcaactcaagttgggccagccttgttatgta
cgtggtggaagagttgattatcatgacaaaagatatccaaatcgcacaggccacgattgt
gtgatcttcaacaataatatagcagaagtaactacaaactttgtaactccgattgcaaca
ctcaatgctcccaagattatttataaggttcatggaatgataacacagcggggcaaatat
tccaaaaaagaagttttttgttttgttataactgatgacaaaggagactctgttaatgtt
gctgcattctgcgaatttgctgattggctatacgagaatcttaaggagaagcagtggtat
tacttatactgtggacttattgaaaaagtatgcaaaccagacgaccaaaaagagcccaat
aatgttatcattcttcacaataaatgtcaaattgagactccttctgacccatcagttgct
gacccatttgctgagttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGAATTCATTTCCTGCTCACCG 140 163 112 Antisense
TGCTCACCGACTCGTTAGGATGCTC 598 579 128 Antisense
GGGCCAGCCTTGTTATGTACGTGGT 228 491 213 Antisense
AAGATATCCAAATCGCACAGGCCAC 329 155 261 Antisense
ACAGGCCACGATTGTGTGATCTTCA 518 107 277 Antisense
TTGTAACTCCGATTGCAACACTCAA 412 703 332 Antisense
AACACTCAATGCTCCCAAGATTATT 89 137 348 Antisense
GTTGCTGCATTCTGCGAATTTGCTG 495 439 469 Antisense
ACCAGACGACCAAAAAGAGCCCAAT 590 83 567 Antisense
CAAATTGAGACTCCTTCTGACCCAT 99 195 619 Antisense
GTTGCTGACCCATTTGCTGAGTTGG 102 441 646 Antisense
Sequence Source Affymetrix Proprietary Database