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[180255_at]

Description Y26D4A.4 /REP_DB=WormBase Gene ID /WP=CE21485 /TR=Q9U2Q3 /GB=CAB54341.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 7.4
(-3)
A 		30.2
(-0.9)
A 		49.7
(1)
A 		71.6
(3)
A 		64
B 14
(-0.8)
A 		5
(-3)
A 		29.2
(3)
A 		29.4
(3)
A 		24
C 25.9
(0.9)
A 		34.9
(3)
A 		12.2
(-2.3)
A 		9.2
(-3)
A 		26
avr 15.8
(-3) 		23.4
(-0.8) 		30.4
(1.2) 		36.7
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 49.3
(3)
A 		6.2
(-2.6)
A 		17.2
(-1.2)
A 		8.2
(-2.3)
A 		4.2
(-2.9)
A 		3.2
(-3)
A 		46
B 33.5
(1.1)
A 		7.1
(-3)
A 		30.1
(0.6)
A 		45.5
(3)
A 		18.7
(-1.2)
A 		25.3
(-0.2)
A 		38
C 10.2
(-1.6)
A 		3
(-3)
A 		9.5
(-1.8)
A 		34.6
(3)
A 		4
(-2.8)
A 		5.3
(-2.6)
A 		32
avr 31
(3) 		5.4
(-3) 		18.9
(0.2) 		29.4
(2.6) 		9
(-2.2) 		11.3
(-1.6) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.7
(-3)
A 		6.6
(-0.7)
A 		13
(3)
A 		10.5
(1.5)
A 		10
B 4.5
(0.5)
A 		1.2
(-3)
A 		6.8
(3)
A 		6.3
(2.5)
A 		6
C 8.6
(2)
A 		10
(3)
A 		4.3
(-1)
A 		1.5
(-3)
A 		9
avr 5.3
(-3) 		5.9
(-1.7) 		8
(3) 		6.1
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.1
(3)
A 		2.2
(-2)
A 		3.7
(-0.9)
A 		2.1
(-2.1)
A 		1.3
(-2.6)
A 		0.8
(-3)
A 		8
B 11.7
(2.8)
A 		2.4
(-3)
A 		7.3
(0)
A 		12.1
(3)
A 		7.6
(0.2)
A 		9.4
(1.3)
A 		10
C 3.8
(-0.1)
A 		0.9
(-3)
A 		2.4
(-1.5)
A 		7
(3)
A 		1.3
(-2.6)
A 		1.8
(-2.1)
A 		6
avr 8.2
(3) 		1.8
(-3) 		4.5
(-0.5) 		7.1
(2) 		3.4
(-1.5) 		4
(-0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1531
Sequence Type Exemplar sequence
Representative Public ID Y26D4A.4 NCBI
Target Description Y26D4A.4 /REP_DB=WormBase Gene ID /WP=CE21485 /TR=Q9U2Q3 /GB=CAB54341.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060885 NCBI Caenorhabditis elegans Y26D4A.4 (Y26D4A.4) mRNA, complete cds. 11/11 None
SNAP00000013478 ENSEMBL cdna:SNAP chromosome:CEL140:I:13077678:13078616:-1 11/11 None
GENEFINDER00000013608 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13077678:13079310:-1 11/11 None
Y26D4A.4 ENSEMBL cdna:known chromosome:CEL140:I:13077649:13079310:-1 gene:Y26D4A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13077608-13079241(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y26D4A.4
Entrez Gene 189545 Entrez gene
SwissProt Q9U2Q3 EMBL-EBI
WormBase CE21485 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54341 Hypothetical protein Y26D4A.4 [Caenorhabditis elegans] ref|NP_493286.1| Y26D4A.4 [Caenorhabditis elegans] 0.0
blast CAB54341 Hypothetical protein Y26D4A.4 [Caenorhabditis elegans] ref|NP_493286.1| Y26D4A.4 [Caenorhabditis elegans] 1.0E-149
blast CAB54342 Hypothetical protein Y26D4A.3 [Caenorhabditis elegans] ref|NP_493287.1| Y26D4A.3 [Caenorhabditis elegans] 1.0E-72
blast CAB54342 Hypothetical protein Y26D4A.3 [Caenorhabditis elegans] ref|NP_493287.1| Y26D4A.3 [Caenorhabditis elegans] 2.0E-72
blast CAE63463 Hypothetical protein CBG07930 [Caenorhabditis briggsae] 4.0E-65
Sequence
Target Sequence 
>C. ELEGANS:180255_AT
tatgatctttcatgcccaaaatcccaactcacatcctgggctgagcgtcgcgcaactgat
aactcgtcagtttgctactcacacatcgttgcgccaggtatcactcaactggaagctaag
gagctctgcgagcttcagggaatgaagctgctcattgaaagatacgagggaatgattcca
atgcccgatacccaacggttgtcacaatcggtgttgcttacaacgccttttgaaccagat
tttggttttgtcggaatagaggacgttcgaacctggtttggtttggagagagatccagtt
gataggacgtggaagtggagtgaaacatcgttcatttatatgggctttagtgggaatcct
ccgatgacatgggcaccaggagagccgaaagaagtcaacaattgcgcatatttgcaaagg
aacgatgcgacagtggcaaaatggcctggttatgctttcttctctgcaccgtgcaactcc
actgatgttggtggtttttcatgcgggtcagtgactcaatcggcaaggggaattccaact
tggaactcgttagttgcagagtacggtcacaatcaaacatgttgtgtacctgacgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGATCTTTCATGCCCAAAATCCC 333 657 544 Antisense
AAAATCCCAACTCACATCCTGGGCT 514 127 561 Antisense
TGAGCGTCGCGCAACTGATAACTCG 191 569 585 Antisense
CAGTTTGCTACTCACACATCGTTGC 426 207 611 Antisense
GTTGCTTACAACGCCTTTTGAACCA 692 437 756 Antisense
ATGGGCTTTAGTGGGAATCCTCCGA 133 51 883 Antisense
AAAATGGCCTGGTTATGCTTTCTTC 169 133 981 Antisense
CACCGTGCAACTCCACTGATGTTGG 167 201 1010 Antisense
TGTTGGTGGTTTTTCATGCGGGTCA 612 561 1029 Antisense
GCGGGTCAGTGACTCAATCGGCAAG 276 293 1046 Antisense
CAAACATGTTGTGTACCTGACGCCG 352 191 1117 Antisense
Sequence Source Affymetrix Proprietary Database