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[180253_at]

Description C18E3.3 /REP_DB=WormBase Gene ID /WP=CE08312 /TR=O02099 /GB=AAB52941.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 71      6grp_total > 12      4grp_total > 47      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 313.2
(3)
P 		174.1
(-1.8)
P 		138
(-3)
P 		200.4
(-0.9)
P 		175
B 380.7
(3)
P 		175.2
(-2.4)
P 		153.4
(-3)
P 		173.6
(-2.5)
P 		227
C 315.8
(3)
P 		194.9
(-1.5)
P 		215
(-0.7)
P 		154
(-3)
P 		162
avr 336.6
(3) 		181.4
(-2.5) 		168.8
(-3) 		176
(-2.7) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 284.9
(-0.2)
P 		393.8
(3)
P 		284.2
(-0.2)
P 		311.4
(0.6)
P 		223.2
(-2)
P 		188.2
(-3)
P 		206
B 306
(0.4)
P 		374.4
(3)
P 		324.8
(1.1)
P 		334.1
(1.5)
P 		215.5
(-3)
P 		228.5
(-2.5)
P 		159
C 356
(0.5)
P 		460.5
(3)
P 		329.1
(-0.2)
P 		266.7
(-1.7)
P 		210.8
(-3)
P 		242
(-2.3)
P 		250
avr 315.6
(0.1) 		409.6
(3) 		312.7
(-0) 		304.1
(-0.3) 		216.5
(-3) 		219.6
(-2.9) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 114
(3)
P 		37.8
(-2.4)
P 		36.1
(-2.5)
P 		29.3
(-3)
P 		85
B 121.4
(3)
P 		43.3
(-2.5)
P 		35.6
(-3)
P 		37
(-2.9)
P 		86
C 104.5
(3)
P 		56
(-0.7)
P 		74.9
(0.7)
P 		26
(-3)
P 		79
avr 113.3
(3) 		45.7
(-1.9) 		48.9
(-1.7) 		30.8
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 52.5
(-2.6)
P 		140
(3)
P 		61.9
(-2)
P 		79
(-0.9)
P 		67.4
(-1.6)
P 		45.8
(-3)
P 		94
B 106.5
(0.6)
P 		124.6
(3)
P 		78.9
(-3)
P 		88.5
(-1.7)
P 		87.6
(-1.9)
P 		85.2
(-2.2)
P 		46
C 131.9
(2.4)
P 		140.5
(3)
P 		83.7
(-0.9)
P 		53.6
(-3)
P 		68.2
(-2)
P 		81
(-1.1)
P 		87
avr 97
(-0.5) 		135
(3) 		74.8
(-2.6) 		73.7
(-2.7) 		74.4
(-2.7) 		70.7
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1162
Sequence Type Exemplar sequence
Representative Public ID C18E3.3 NCBI
Target Description C18E3.3 /REP_DB=WormBase Gene ID /WP=CE08312 /TR=O02099 /GB=AAB52941.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058926 NCBI Caenorhabditis elegans C18E3.3 (C18E3.3) mRNA, complete cds. 11/11 None
SNAP00000003658 ENSEMBL cdna:SNAP chromosome:CEL140:I:4203462:4212514:1 9/11 None
GENEFINDER00000003665 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4203462:4208337:1 11/11 None
C18E3.3 ENSEMBL cdna:known chromosome:CEL140:I:4203460:4208521:1 gene:C18E3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4203461-4208337(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E3.3
Entrez Gene 172016 Entrez gene
SwissProt O02099 EMBL-EBI
WormBase CE08312 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52941 Hypothetical protein C18E3.3 [Caenorhabditis elegans] ref|NP_491327.1| C18E3.3 [Caenorhabditis elegans] 0.0
blast AAB52943 Hypothetical protein C18E3.2 [Caenorhabditis elegans] ref|NP_491329.2| C18E3.2 [Caenorhabditis elegans] 0.0
blast CAE66812 Hypothetical protein CBG12176 [Caenorhabditis briggsae] 0.0
blast CAE66746 Hypothetical protein CBG12096 [Caenorhabditis briggsae] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003121 EMBL-EBI SWIB complex, BAF60b 1.4E-33
Sequence
Target Sequence 
>C. ELEGANS:180253_AT
ttaccgcgattggatgcgttccggccattttatgagacataaagtgaatagtgtatgttc
acaattggatgcaaattgtccttacttcattctaaaggaagaaacaagagatagcccagc
actgatgctccaaattgaagaacttcgcgataagcctattccactggaactactgagcaa
aatggtttgcatcagaatgaatgccagattttttatcgattatttcgaccaagtttcttg
tttaactccagcctgctgggccaacatagatttaaataaacttggcgacttcacaagttc
tgatgacgaagttgcagacattggaaaaagctttcttgcaacattatccgatcttccaga
tatgccaactgaagtggttatgactattaagaagaactcccacattttatacaaaaaaat
tatgagtgacttagtgagaaccatgttcattttgaaattggatagtgatggcaaaccaca
tttcttctatgatggtgcatttgacataaagccgaaggttagacgatctccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCGCGATTGGATGCGTTCCGGC 413 681 2130 Antisense
GCGTTCCGGCCATTTTATGAGACAT 267 291 2145 Antisense
GCAAATTGTCCTTACTTCATTCTAA 269 317 2200 Antisense
ATAGCCCAGCACTGATGCTCCAAAT 116 23 2240 Antisense
GAACTTCGCGATAAGCCTATTCCAC 200 351 2269 Antisense
AAGTTTCTTGTTTAACTCCAGCCTG 243 157 2360 Antisense
TCCAGCCTGCTGGGCCAACATAGAT 164 589 2376 Antisense
TTCTTGCAACATTATCCGATCTTCC 601 689 2462 Antisense
GAAGAACTCCCACATTTTATACAAA 325 337 2520 Antisense
GATGGCAAACCACATTTCTTCTATG 705 405 2596 Antisense
GCCGAAGGTTAGACGATCTCCACCA 80 285 2640 Antisense
Sequence Source Affymetrix Proprietary Database