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[180252_at]

Description F07E5.8 /REP_DB=WormBase Gene ID /WP=CE09220 /TR=P91227 /GB=AAB37907.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 1.5
(-3)
A 		2.1
(-2.6)
A 		3.4
(-1.9)
A 		11.6
(3)
A 		10
B 1.5
(-3)
A 		35.1
(3)
A 		2.7
(-2.8)
A 		3.3
(-2.7)
A 		34
C 3.4
(-3)
A 		13
(3)
A 		5.5
(-1.7)
A 		7.5
(-0.4)
A 		10
avr 2.1
(-3) 		16.7
(3) 		3.9
(-2.3) 		7.5
(-0.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 23.8
(2.2)
A 		1.2
(-3)
A 		22.2
(1.8)
A 		2.3
(-2.7)
A 		2.8
(-2.6)
A 		27.5
(3)
A 		26
B 14.8
(0.1)
A 		1.8
(-3)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		4.1
(-2.5)
A 		27.1
(3)
A 		25
C 2.7
(-2.8)
A 		33.6
(3)
A 		2
(-3)
A 		1.8
(-3)
A 		6.8
(-2.1)
A 		11.6
(-1.2)
A 		32
avr 13.8
(0.5) 		12.2
(0) 		8.8
(-1) 		2
(-3) 		4.6
(-2.2) 		22.1
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.6
(-2.5)
A 		0.5
(-3)
A 		0.9
(-1)
A 		1.7
(3)
A 		1
B 0.5
(-3)
A 		8.7
(3)
A 		0.6
(-2.9)
A 		0.7
(-2.9)
A 		8
C 1.1
(-3)
A 		3.7
(3)
A 		1.9
(-1.2)
A 		1.3
(-2.5)
A 		3
avr 0.7
(-3) 		4.3
(3) 		1.1
(-2.3) 		1.2
(-2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.4
(0.8)
A 		0.4
(-3)
A 		4.8
(1.2)
A 		0.6
(-2.8)
A 		0.8
(-2.6)
A 		6.7
(3)
A 		6
B 5.1
(-0.1)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.7
(-2.3)
A 		10.1
(3)
A 		10
C 1
(-2.6)
A 		10.2
(3)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		2.2
(-1.9)
A 		3.9
(-0.9)
A 		10
avr 3.5
(-0.2) 		3.7
(0) 		1.9
(-1.7) 		0.5
(-3) 		1.6
(-2) 		6.9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4183
Sequence Type Exemplar sequence
Representative Public ID F07E5.8 NCBI
Target Description F07E5.8 /REP_DB=WormBase Gene ID /WP=CE09220 /TR=P91227 /GB=AAB37907.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061771 NCBI Caenorhabditis elegans F07E5.8 (F07E5.8) mRNA, complete cds. 11/11 None
SNAP00000023370 ENSEMBL cdna:SNAP chromosome:CEL140:II:2072362:2076703:-1 11/11 None
GENEFINDER00000023374 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2072362:2075582:-1 11/11 None
F07E5.8 ENSEMBL cdna:known chromosome:CEL140:II:2072362:2075831:-1 gene:F07E5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2072360-2074678(-) 99.43 99.43
Public Domain and Genome References
Gene Title
Ensembl F07E5.8
Entrez Gene 184145 Entrez gene
SwissProt P91227 EMBL-EBI
WormBase CE09220 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37907 Hypothetical protein F07E5.8 [Caenorhabditis elegans] ref|NP_494172.1| F07E5.8 [Caenorhabditis elegans] 0.0
blast AAB37879 Hypothetical protein T16A1.2 [Caenorhabditis elegans] ref|NP_494180.1| T16A1.2 [Caenorhabditis elegans] 0.0
blast CAB04332 Hypothetical protein F36G9.13 [Caenorhabditis elegans] ref|NP_507009.1| F36G9.13 [Caenorhabditis elegans] 1.0E-63
blast AAC26299 Hypothetical protein Y57G7A.6 [Caenorhabditis elegans] ref|NP_493938.1| Y57G7A.6 [Caenorhabditis elegans] 9.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.1E-21
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.8E-21
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.1E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494172.1 1 721-743
F07E5.8 1 721-743
SNAP00000023370 1 750-772
GENEFINDER00000023374 1 661-683
Sequence
Target Sequence 
>C. ELEGANS:180252_AT
ttaggagactcctactacacaccactcttgaagtctttctcgggagactttggacataca
gttctcgaaatcgctacatatttctataaggtcaacacgtgggaggatcgaattgttgac
ccgaaaaaactgaagttccatcaatttggggactggctagcaaaattggctagtttcgaa
gacatagatctacatttggagaatcgattgatgctaggttcatggtgtgctattccaaaa
acacagtactccgaaaacacagagttgaaaggagcattgaaggaatttgaagaagcgaca
tttgcactgtcaaagctggatcttaaattctccgtctacaagtcctcccttctcgcaatg
ccaagagttatgagacaaattgagaaagtgcttaagaacgagacaatcgaagtgcaacca
gaatctatcaagtctgcatatcatggtccaaaagttgtatccactatttatcacgaattg
accattttccttatcgcttatgccgctggaaacctattgattggtgcgatttggtgttat
tgtgaggaagactgcttgatccatgtattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGGAGACTCCTACTACACACCAC 671 681 1696 Antisense
ACTCTTGAAGTCTTTCTCGGGAGAC 595 99 1719 Antisense
TTCTCGGGAGACTTTGGACATACAG 660 689 1732 Antisense
GGAGGATCGAATTGTTGACCCGAAA 394 513 1797 Antisense
AGTTCCATCAATTTGGGGACTGGCT 665 61 1829 Antisense
GATGCTAGGTTCATGGTGTGCTATT 689 413 1905 Antisense
GCTATTCCAAAAACACAGTACTCCG 652 303 1924 Antisense
AAGTCTGCATATCATGGTCCAAAAG 389 155 2125 Antisense
GAATTGACCATTTTCCTTATCGCTT 480 323 2170 Antisense
GATTGGTGCGATTTGGTGTTATTGT 464 435 2214 Antisense
GGAAGACTGCTTGATCCATGTATTG 446 531 2241 Antisense
Sequence Source Affymetrix Proprietary Database