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[180251_at]

Description T10H9.1 /REP_DB=WormBase Gene ID /WP=CE18249 /TR=O76412 /GB=AAC19235.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 27.4
(-2)
M 		4.4
(-3)
A 		10.1
(-2.7)
A 		139.9
(3)
P 		136
B 37.7
(-3)
P 		54.3
(-1.4)
A 		48
(-2)
A 		100.3
(3)
P 		63
C 31.3
(-3)
P 		83.3
(-0)
A 		31.6
(-3)
A 		135.8
(3)
P 		105
avr 32.1
(-2.9) 		47.3
(-1.9) 		29.9
(-3) 		125.3
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 42.1
(-0.8)
A 		33.7
(-2.9)
M 		33.5
(-3)
A 		56.5
(3)
A 		34
(-2.9)
A 		45.1
(0)
A 		23
B 33.2
(-3)
P 		36
(-2.6)
P 		72
(3)
P 		33.2
(-3)
A 		52.3
(-0)
P 		55.8
(0.5)
P 		39
C 38.7
(-3)
P 		76.4
(3)
P 		46.5
(-1.8)
A 		70.1
(2)
A 		47.3
(-1.6)
P 		56.9
(-0.1)
P 		38
avr 38
(-3) 		48.7
(1.2) 		50.7
(2) 		53.3
(3) 		44.5
(-0.5) 		52.6
(2.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 10
(-0.2)
M 		0.9
(-3)
A 		2.6
(-2.5)
A 		20.5
(3)
P 		20
B 12
(-2.5)
P 		13.4
(-1.7)
A 		11.1
(-3)
A 		21.4
(3)
P 		10
C 10.4
(-3)
P 		23.9
(3)
A 		11
(-2.7)
A 		22.9
(2.6)
P 		14
avr 10.8
(-1.8) 		12.7
(-1) 		8.2
(-3) 		21.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.8
(-2.6)
A 		12
(1)
M 		7.3
(-3)
A 		14.3
(3)
A 		10.3
(-0.4)
A 		11
(0.2)
A 		7
B 11.6
(-1.6)
P 		12
(-1.5)
P 		17.5
(1.2)
P 		8.8
(-3)
A 		21.2
(3)
P 		20.8
(2.8)
P 		12
C 14.3
(-1.7)
P 		23.3
(3)
P 		11.8
(-3)
A 		14.1
(-1.8)
A 		15.3
(-1.2)
P 		19
(0.8)
P 		12
avr 11.2
(-3) 		15.8
(1.8) 		12.2
(-1.9) 		12.4
(-1.7) 		15.6
(1.6) 		16.9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11828
Sequence Type Exemplar sequence
Representative Public ID T10H9.1 NCBI
Target Description T10H9.1 /REP_DB=WormBase Gene ID /WP=CE18249 /TR=O76412 /GB=AAC19235.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072285 NCBI Caenorhabditis elegans T10H9.1 (T10H9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000019225 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6652211:6654644:1 11/11 None
T10H9.1 ENSEMBL cdna:known chromosome:CEL140:V:6652211:6654644:1 gene:T10H9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019215 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6652211-6654645(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10H9.1
Entrez Gene 188401 Entrez gene
SwissProt O76412 EMBL-EBI
WormBase CE18249 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504686 T10H9.1 [Caenorhabditis elegans] gb|AAC19235.1| Hypothetical protein T10H9.1 [Caenorhabditis elegans] 0.0
blast CAE71920 Hypothetical protein CBG18983 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504686.1 6 21-43,58-80,135-157,185-207,227-249,259-281
T10H9.1 6 21-43,58-80,135-157,185-207,227-249,259-281
GENEFINDER00000019225 6 21-43,58-80,135-157,185-207,227-249,259-281
Sequence
Target Sequence 
>C. ELEGANS:180251_AT
gacattttcatgactcgaatccactgtgtcacgacttcatcatctggtccagcctttcac
ttgtacttccttctctctacgatttttttcggtgtactcctttctcttgcatattttcta
ttcatctgcaaactatttgtcctgcgagaaactcgagttgtaaatgtcaaaaaacgaagc
cgcgaaaatttccagcaggttaactcattgacagtgatggtcattcttcttgtagtgatt
ttcaatgtactaccaagtcttctttatctttatgatatgattattggagaggtacatttc
atgaaatggggaccaattatcaccattggttaccactgctacggttcactgtcattcttt
ttctacaattgccgtcatcgagaaattcgagcagctttgaataaaatcgaagtaatccga
aatttcgtcaactgtgacaagccatcgaaaaccaattcgaaaagcgaggctagtggacaa
ttcagcaatatcatcaaaggaatccccaacgttatagtctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTTTCATGACTCGAATCCACT 296 371 490 Antisense
GAATCCACTGTGTCACGACTTCATC 396 329 506 Antisense
TCCTTCTCTCTACGATTTTTTTCGG 649 591 557 Antisense
GCATATTTTCTATTCATCTGCAAAC 216 309 598 Antisense
AACTATTTGTCCTGCGAGAAACTCG 412 137 620 Antisense
GAAGCCGCGAAAATTTCCAGCAGGT 192 345 665 Antisense
AGTGATGGTCATTCTTCTTGTAGTG 39 61 702 Antisense
GTACTACCAAGTCTTCTTTATCTTT 145 459 736 Antisense
TTACCACTGCTACGGTTCACTGTCA 532 681 819 Antisense
CTTTTTCTACAATTGCCGTCATCGA 142 223 846 Antisense
GGAATCCCCAACGTTATAGTCTCGA 664 531 988 Antisense
Sequence Source Affymetrix Proprietary Database