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[180250_at]

Description Y63D3A.7 /REP_DB=WormBase Gene ID /WP=CE20339 /TR=Q9XWG2 /GB=CAA21708.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 31      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 22      6grp_total > 21      4grp_total > 60      6grp_highest_sub > 02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1487
1 2 3 4 range
A 1692.6
(2.2)
P 		1618.2
(1.9)
P 		1898.4
(3)
P 		436.4
(-3)
P 		1462
B 1548.9
(2.8)
P 		1486.2
(2.5)
P 		1587.5
(3)
P 		411.7
(-3)
P 		1176
C 1258.2
(0.2)
P 		1391.9
(0.9)
P 		1818.4
(3)
P 		608.1
(-3)
P 		1210
avr 1499.9
(1.7) 		1498.8
(1.7) 		1768.1
(3) 		485.4
(-3) 		1283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1042
1 2 3 4 5 6 range
A 1392.1
(-0.8)
P 		1582.9
(0.8)
P 		1849.4
(3)
P 		1572.6
(0.7)
P 		1121.6
(-3)
P 		1242.1
(-2)
P 		728
B 1531.1
(-1.7)
P 		2014.8
(3)
P 		1946.3
(2.3)
P 		1396
(-3)
P 		1679
(-0.3)
P 		1460.7
(-2.4)
P 		619
C 1763.5
(0.6)
P 		2163.9
(3)
P 		2029.3
(2.2)
P 		1352.5
(-1.9)
P 		1220.2
(-2.7)
P 		1176.9
(-3)
P 		987
avr 1562.2
(-0.5) 		1920.5
(2.8) 		1941.7
(3) 		1440.4
(-1.6) 		1340.3
(-2.6) 		1293.2
(-3) 		649
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 570
1 2 3 4 range
A 616.3
(3)
P 		351.3
(0.1)
P 		496.3
(1.7)
P 		63.9
(-3)
P 		552
B 493.9
(3)
P 		367.1
(1.1)
P 		367.9
(1.1)
P 		87.7
(-3)
P 		406
C 416.5
(0.5)
P 		400.2
(0.4)
P 		633.8
(3)
P 		102.5
(-3)
P 		531
avr 508.9
(3) 		372.9
(1.1) 		499.3
(2.9) 		84.7
(-3) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 256.6
(-3)
P 		563
(3)
P 		402.8
(-0.1)
P 		398.9
(-0.2)
P 		338.4
(-1.4)
P 		302.4
(-2.1)
P 		306
B 532.7
(0.1)
P 		670.6
(2.8)
P 		472.6
(-1)
P 		369.7
(-3)
P 		682.1
(3)
P 		544.7
(0.4)
P 		312
C 653.7
(2.9)
P 		660.3
(3)
P 		516.5
(0.8)
P 		272
(-3)
P 		394.8
(-1.1)
P 		394
(-1.1)
P 		388
avr 481
(-0.2) 		631.3
(3) 		464
(-0.5) 		346.9
(-3) 		471.8
(-0.4) 		413.7
(-1.6) 		284
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2429
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.7 NCBI
Target Description Y63D3A.7 /REP_DB=WormBase Gene ID /WP=CE20339 /TR=Q9XWG2 /GB=CAA21708.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061064 NCBI Caenorhabditis elegans Y63D3A.7 (Y63D3A.7) mRNA, complete cds. 11/11 None
Y63D3A.7 ENSEMBL cdna:known chromosome:CEL140:I:14121560:14122208:1 gene:Y63D3A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002958 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14121490-14122052(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y63D3A.7
Entrez Gene 173279 Entrez gene
SwissProt Q9XWG2 EMBL-EBI
WormBase CE20339 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21708 Hypothetical protein Y63D3A.7 [Caenorhabditis elegans] ref|NP_493465.1| Y63D3A.7 [Caenorhabditis elegans] 4.0E-60
blast CAE71812 Hypothetical protein CBG18827 [Caenorhabditis briggsae] 3.0E-43
blast CAF92313 unnamed protein product [Tetraodon nigroviridis] 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR007741 EMBL-EBI Mitochondrial ribosome 1.5E-41
Sequence
Target Sequence 
>C. ELEGANS:180250_AT
taggagttgcaaaataccgcgcgccgcgcttgccaaagtgggcgggatcacggatgtctg
tccgtcttgccggcaccgctcttcgcgagattcgcatccacgtctgccagaaaagtccag
catcggcgggagtccgcgcgttcatcgaaaacgactatgttggaatcaaaaaagccaatc
cacagttcccaattctgattcgtgaggcgtctggcatcgtgccaagagttttcgccagat
acgagcacggagttgagcgagtcgccactttggaggatttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGAGTTGCAAAATACCGCGCGCC 4 655 35 Antisense
CGCCGCGCTTGCCAAAGTGGGCGGG 124 255 56 Antisense
GATCACGGATGTCTGTCCGTCTTGC 684 419 80 Antisense
GCATCCACGTCTGCCAGAAAAGTCC 167 307 128 Antisense
GAAAAGTCCAGCATCGGCGGGAGTC 192 351 144 Antisense
CCAATCCACAGTTCCCAATTCTGAT 272 277 209 Antisense
TTCTGATTCGTGAGGCGTCTGGCAT 131 695 227 Antisense
GCATCGTGCCAAGAGTTTTCGCCAG 279 307 248 Antisense
GTTTTCGCCAGATACGAGCACGGAG 111 449 262 Antisense
GCACGGAGTTGAGCGAGTCGCCACT 692 313 279 Antisense
GAGTCGCCACTTTGGAGGATTTGTC 163 401 293 Antisense
Sequence Source Affymetrix Proprietary Database