[Home] | [Total List]

[180248_s_at]

Description C34C12.1 /REP_DB=WormBase Gene ID /WP=CE01509 /TR=Q09494 /GB=CAA87099.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 15.1
(3)
A 		6.9
(-1.3)
A 		8.1
(-0.7)
A 		3.6
(-3)
A 		12
B 1.6
(-3)
A 		22.3
(3)
A 		21.4
(2.7)
A 		16.7
(1.4)
A 		21
C 3.3
(-3)
A 		6.1
(-2.6)
A 		4.2
(-2.9)
A 		45.4
(3)
A 		42
avr 6.7
(-3) 		11.8
(-1) 		11.2
(-1.2) 		21.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 27.7
(1.7)
A 		30
(2.1)
A 		2.4
(-3)
A 		15.6
(-0.5)
A 		34.6
(3)
A 		7.7
(-2)
A 		32
B 4
(-2.8)
A 		4.6
(-2.8)
A 		46.8
(3)
A 		21.2
(-0.5)
A 		2.9
(-3)
A 		9.4
(-2.1)
A 		44
C 5.5
(-1.6)
A 		18.8
(3)
A 		1.6
(-3)
A 		5.9
(-1.5)
A 		3.8
(-2.2)
A 		8.7
(-0.5)
A 		17
avr 12.4
(-0.5) 		17.8
(3) 		16.9
(2.4) 		14.2
(0.7) 		13.8
(0.4) 		8.6
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.5
(3)
A 		1.5
(-1.8)
A 		2.1
(-1.1)
A 		0.5
(-3)
A 		5
B 0.5
(-3)
A 		5.5
(3)
A 		5
(2.4)
A 		3.6
(0.7)
A 		5
C 1.1
(-3)
A 		1.7
(-2.5)
A 		1.5
(-2.6)
A 		7.7
(3)
A 		7
avr 2.4
(-3) 		2.9
(-1) 		2.9
(-1) 		3.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.1
(-0.3)
A 		10.7
(3)
A 		0.5
(-3)
A 		3.9
(-1)
A 		10.4
(2.8)
A 		1.9
(-2.2)
A 		10
B 1.4
(-2.9)
A 		1.5
(-2.8)
A 		11.4
(3)
A 		5.6
(-0.4)
A 		1.2
(-3)
A 		3.5
(-1.6)
A 		10
C 2
(-1.2)
A 		5.7
(3)
A 		0.4
(-3)
A 		1.2
(-2.1)
A 		1.2
(-2.1)
A 		2.9
(-0.2)
A 		5
avr 2.8
(-3) 		6
(3) 		4.1
(-0.6) 		3.6
(-1.5) 		4.3
(-0.2) 		2.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180248_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6026
Sequence Type Exemplar sequence
Representative Public ID C34C12.1 NCBI
Target Description C34C12.1 /REP_DB=WormBase Gene ID /WP=CE01509 /TR=Q09494 /GB=CAA87099.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065310(11), NM_060617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065310 NCBI Caenorhabditis elegans C34C12.1 (C34C12.1) mRNA, complete cds. 11/11 None
NM_060617 NCBI Caenorhabditis elegans Y47H9C.9 (Y47H9C.9) mRNA, complete cds. 11/11 A 
SNAP00000036889 ENSEMBL cdna:SNAP chromosome:CEL140:I:11906911:11909598:-1 11/11 None
GENEFINDER00000036898 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11906911:11909580:-1 11/11 None
SNAP00000028569 ENSEMBL cdna:SNAP chromosome:CEL140:III:3454330:3460030:1 11/11 None
GENEFINDER00000028579 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3454348:3460030:1 11/11 None
Y47H9C.9 ENSEMBL cdna:known chromosome:CEL140:I:11906911:11909580:-1 gene:Y47H9C.9 11/11 A 
C34C12.1 ENSEMBL cdna:known chromosome:CEL140:III:3454330:3455835:1 gene:C34C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3454329-3455835(+) 100.0 100.0
chrI:11907781-11909529(-) 98.45 98.45
Public Domain and Genome References
Gene Title

Ensembl Y47H9C.9
C34C12.1
Entrez Gene 183198 Entrez gene
190000 Entrez gene
SwissProt Q09494 EMBL-EBI
Q9XWD9 EMBL-EBI
WormBase CE01509 Wormbase
CE20269 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87099 Hypothetical protein C34C12.1 [Caenorhabditis elegans] ref|NP_497711.1| C34C12.1 [Caenorhabditis elegans] 0.0
blast CAA21736 Hypothetical protein Y47H9C.9 [Caenorhabditis elegans] ref|NP_493018.1| Y47H9C.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 4.40000009536743
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 3.20000004768372
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 3.09999990463257
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.649999976158142
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.639999985694885
scop a.4.5.C-terminal fragment of elongation factor SelB All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; C-terminal fragment of elongation factor SelB 3.09999990463257
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 5.2E-124
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 5.2E-124
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 3.2E-125
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 3.2E-125
Sequence
Target Sequence 
>C. ELEGANS:180248_S_AT
ggagacgatcctatttggcttacgatcctcggcgataaaggatcagaagaattcaagtta
tgtttgtcaattggaaatgtctcccaacctaacagctgtttccatctaattccacttggc
attttcaatgatgacgaaagcagtgaaaacattcgaaagtatctaggtcccatcgttgaa
caactcaatcgattattgttcctaaagataaaagtaggcgataaggacattgatgtacct
gtggagcagtatcttgggggagatatgaagttccaatgcgatgctattggtcatgaggga
ggaaacagtacctatcagtgcatgcagtgcttttcgctacgaggacagtcgatcagcagg
tccatgcaactaaaaaggggtgacatcaagaaaaccaggatctcgaaggcagtagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGACGATCCTATTTGGCTTACGA 132 519 874 Antisense
TTGGCTTACGATCCTCGGCGATAAA 157 709 888 Antisense
GTCAATTGGAAATGTCTCCCAACCT 695 459 939 Antisense
CCCAACCTAACAGCTGTTTCCATCT 80 255 956 Antisense
GTTTCCATCTAATTCCACTTGGCAT 396 451 971 Antisense
ATCTAGGTCCCATCGTTGAACAACT 311 13 1034 Antisense
CCTGTGGAGCAGTATCTTGGGGGAG 173 265 1111 Antisense
GATATGAAGTTCCAATGCGATGCTA 54 425 1135 Antisense
GGAAACAGTACCTATCAGTGCATGC 598 527 1174 Antisense
CAGTGCATGCAGTGCTTTTCGCTAC 471 207 1189 Antisense
AACCAGGATCTCGAAGGCAGTAGTC 549 147 1266 Antisense
Sequence Source Affymetrix Proprietary Database