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[180246_s_at]

Description Y39E4B.2 /REP_DB=WormBase Gene ID /WP=CE21714 /TR=Q9U2K7 /GB=CAB54425.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      4grp_high_8_8 > 29      6grp_total > 87      4grp_total > 60      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 94.6
(0.4)
P 		133.3
(3)
A 		131.9
(2.9)
A 		45.5
(-3)
A 		88
B 170.8
(3)
P 		114.6
(-1.3)
A 		139.3
(0.6)
M 		93.1
(-3)
A 		78
C 145.1
(-3)
P 		187
(3)
P 		146.7
(-2.8)
P 		177.1
(1.6)
P 		42
avr 136.8
(1.8) 		145
(3) 		139.3
(2.1) 		105.2
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 123.4
(-2.3)
A 		103.8
(-2.8)
P 		95.6
(-3)
P 		140.4
(-1.9)
P 		161.3
(-1.4)
P 		343.3
(3)
P 		248
B 83
(-3)
P 		123.1
(-2.2)
A 		98.5
(-2.7)
A 		133.5
(-2)
P 		272.5
(0.9)
P 		375.9
(3)
P 		293
C 99.3
(-2.7)
P 		119
(-2.3)
A 		87.1
(-3)
A 		158.4
(-1.4)
M 		212.1
(-0.2)
P 		352.1
(3)
P 		265
avr 101.9
(-2.8) 		115.3
(-2.5) 		93.7
(-3) 		144.1
(-1.9) 		215.3
(-0.2) 		357.1
(3) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 34.5
(3)
P 		28.9
(1.8)
A 		34.5
(3)
A 		6.7
(-3)
A 		28
B 54.5
(3)
P 		28.3
(-1.5)
A 		32.3
(-0.8)
M 		19.8
(-3)
A 		35
C 48
(1.5)
P 		53.8
(3)
P 		51.1
(2.3)
P 		29.9
(-3)
P 		24
avr 45.7
(3) 		37
(1.1) 		39.3
(1.6) 		18.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 22.7
(-2.8)
A 		36.9
(-1.5)
P 		20.8
(-3)
P 		35.6
(-1.6)
P 		48.7
(-0.3)
P 		83.6
(3)
P 		63
B 28.9
(-2.7)
P 		41
(-2.1)
A 		23.9
(-3)
A 		35.4
(-2.4)
P 		110.7
(1.5)
P 		140.2
(3)
P 		116
C 36.8
(-2.1)
P 		36.3
(-2.1)
A 		22.2
(-3)
A 		31.9
(-2.4)
M 		68.6
(-0.1)
P 		117.9
(3)
P 		96
avr 29.5
(-2.5) 		38.1
(-2) 		22.3
(-3) 		34.3
(-2.2) 		76
(0.5) 		113.9
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180246_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7170
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.2 NCBI
Target Description Y39E4B.2 /REP_DB=WormBase Gene ID /WP=CE21714 /TR=Q9U2K7 /GB=CAB54425.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067318 NCBI Caenorhabditis elegans Y39E4B.2 (Y39E4B.2) mRNA, complete cds. 11/11 None
SNAP00000012017 ENSEMBL cdna:SNAP chromosome:CEL140:III:13165451:13169027:-1 11/11 None
GENEFINDER00000012036 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13165451:13169027:-1 10/11 None
Y39E4B.2 ENSEMBL cdna:known chromosome:CEL140:III:13165253:13169027:-1 gene:Y39E4B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13165446-13169023(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39E4B.2
Entrez Gene 176734 Entrez gene
SwissProt Q9U2K7 EMBL-EBI
WormBase CE21714 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54425 Hypothetical protein Y39E4B.2 [Caenorhabditis elegans] ref|NP_499719.1| Y39E4B.2 [Caenorhabditis elegans] 0.0
blast CAE58999 Hypothetical protein CBG02273 [Caenorhabditis briggsae] 3.0E-86
blast NP_494896 R05F9.11 [Caenorhabditis elegans] gb|AAA83173.1| Hypothetical protein R05F9.11 [Caenorhabditis elegans] 7.0E-83
Sequence
Target Sequence 
>C. ELEGANS:180246_S_AT
caagccgtggagagctcttccggcgttgacgagattgtgcatacagatcactcggctcaa
cagctcgcttctcgtggaatgcaaagatcgtcgatcaaggatcaagctcactcggcggct
ctcaagttttcgagaactcgacgccatcgatcagttaaacccgttatcgtgcctgcagaa
actttcgaatatgctccggatcctaaaaagaagaaagaagctcaagaaactatgccagtt
tctgggagaaatggaagaaagcgtgggcgtccaaagagcgtgcctaaatcaaaagtttca
aatcctgcacgaatcctgtatgaaaaactcgctgaagatatgatttccgagcatctttcc
actgatctgaccgaacaagaagccttcaccgacaggccgcaatcaagcctcgaaccacag
aaaaatgagctgtttaattgggatgctgctccacaagatgcccagatttcaaatcaaacc
acagagccatcgtgcggtgaagatattttcatcgaagactttggagaattcaagtcccaa
gatgacgtcatgttcactgcagaagatttcaacgattctcttattccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCCGTGGAGAGCTCTTCCGGCG 306 187 721 Antisense
GTGCATACAGATCACTCGGCTCAAC 18 481 757 Antisense
AGCTCGCTTCTCGTGGAATGCAAAG 337 81 782 Antisense
ACTCGGCGGCTCTCAAGTTTTCGAG 643 97 830 Antisense
AACTTTCGAATATGCTCCGGATCCT 135 139 900 Antisense
GTGGGCGTCCAAAGAGCGTGCCTAA 77 489 983 Antisense
CAAATCCTGCACGAATCCTGTATGA 295 193 1019 Antisense
ATATGATTTCCGAGCATCTTTCCAC 108 21 1058 Antisense
TGGGATGCTGCTCCACAAGATGCCC 7 549 1159 Antisense
CAAACCACAGAGCCATCGTGCGGTG 191 193 1195 Antisense
TTTCAACGATTCTCTTATTCCACCA 642 667 1287 Antisense
Sequence Source Affymetrix Proprietary Database