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[180244_at]

Description W10D9.2 /REP_DB=WormBase Gene ID /WP=CE28514 /TR=O17283 /GB=AAB71056.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(-3)
A 		1.2
(-0.7)
A 		1.1
(-1.2)
A 		2
(3)
A 		1
B 1
(-3)
A 		1.6
(3)
A 		1.6
(3)
A 		1.1
(-2)
A 		1
C 1.1
(-1)
A 		0.6
(-3)
A 		0.8
(-2.2)
A 		2.1
(3)
A 		2
avr 0.9
(-3) 		1.1
(-1.5) 		1.2
(-0.8) 		1.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2.2
(3)
A 		0.8
(-3)
A 		2.2
(3)
A 		1.1
(-1.7)
A 		1.3
(-0.9)
A 		1.9
(1.7)
A 		1
B 0.5
(-3)
A 		0.6
(-2)
A 		0.9
(1)
A 		1.1
(3)
A 		0.5
(-3)
A 		1.1
(3)
A 		1
C 0.6
(-3)
A 		1
(-1.9)
A 		1.6
(-0.1)
A 		0.8
(-2.4)
A 		0.6
(-3)
A 		2.7
(3)
A 		2
avr 1.1
(-1.4) 		0.8
(-3) 		1.6
(1.4) 		1
(-1.9) 		0.8
(-3) 		1.9
(3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 0
1 2 3 4 range
A 0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0
B 0.3
(-0)
A 		0.4
(3)
A 		0.4
(3)
A 		0.2
(-3)
A 		0
C 0.4
(3)
A 		0.2
(-3)
A 		0.3
(-0)
A 		0.4
(3)
A 		0
avr 0.3
(-3) 		0.3
(-3) 		0.3
(-3) 		0.3
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(0)
A 		0.3
(-3)
A 		0.5
(3)
A 		0.3
(-3)
A 		0.4
(0)
A 		0.5
(3)
A 		0
B 0.2
(-3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.3
(-0)
A 		0.2
(-3)
A 		0.4
(3)
A 		0
C 0.2
(-3)
A 		0.3
(-2.1)
A 		0.4
(-1.3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.9
(3)
A 		1
avr 0.3
(-3) 		0.3
(-3) 		0.4
(-1) 		0.3
(-3) 		0.3
(-3) 		0.6
(3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4119
Sequence Type Exemplar sequence
Representative Public ID W10D9.2 NCBI
Target Description W10D9.2 /REP_DB=WormBase Gene ID /WP=CE28514 /TR=O17283 /GB=AAB71056.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061336
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W10D9.2 ENSEMBL cdna:known chromosome:CEL140:II:448264:453147:-1 gene:W10D9.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061336 7/11 Cross Hyb Matching Probes None
SNAP00000024349 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:448317-453147(-) 100.0 100.0
Public Domain and Genome References
Ensembl W10D9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71056 Hypothetical protein W10D9.2 [Caenorhabditis elegans] ref|NP_493737.2| W10D9.2 [Caenorhabditis elegans] 9.0E-68
blast AAB71199 Hypothetical protein C24H12.1 [Caenorhabditis elegans] ref|NP_493736.1| C24H12.1 [Caenorhabditis elegans] 2.0E-44
blast AAB71207 Hypothetical protein C24H12.11 [Caenorhabditis elegans] ref|NP_493734.1| C24H12.11 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
W10D9.2 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:180244_AT
gtaatcgatttggccagtacatcaactcgtttccgacaaagactgagacaagcgaatcga
aaaattttcaacctaatcattgaatgctatgaaaagttttcttatgaagatgaagaattg
cactgttatcgaaggatattagttctggaaacagagagacacgaactacaaggaagtgaa
caagtcgccttgcttgtcttatggaactcacaagatttaatcaatcttttgaccatctta
aatggatctttttcaatcgaccatgttgaattggcaattgaccgtgatcaactctatgga
gagtttcagtccgcgtggggccaccctttatttcggaaatgccattttgttaaagttctc
ggacaaaactcatactttgacagtgaagatatggaatttatattgaaaaatttcgatttg
aaatatggattttcaaatcattgtttacaacaagtcggtgatgatctggaagtagtggat
tgttcaaaaggacgagatattgaaaggagtgatggtctacttgcaactattttaatcgaa
tccagaagcatgtactttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATCGATTTGGCCAGTACATCAA 201 463 166 Antisense
ACTCGTTTCCGACAAAGACTGAGAC 461 97 190 Antisense
GAAGAATTGCACTGTTATCGAAGGA 152 341 277 Antisense
GGAAGTGAACAAGTCGCCTTGCTTG 490 531 337 Antisense
CTTGCTTGTCTTATGGAACTCACAA 304 219 354 Antisense
ATCAATCTTTTGACCATCTTAAATG 229 27 385 Antisense
GGATCTTTTTCAATCGACCATGTTG 258 511 409 Antisense
ACTCTATGGAGAGTTTCAGTCCGCG 509 99 456 Antisense
AGTTCTCGGACAAAACTCATACTTT 191 63 519 Antisense
AAGTCGGTGATGATCTGGAAGTAGT 590 157 617 Antisense
ATCGAATCCAGAAGCATGTACTTTC 326 37 700 Antisense
Sequence Source Affymetrix Proprietary Database