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[180243_at]

Description ZC204.3 /REP_DB=WormBase Gene ID /WP=CE15088 /TR=P91543 /GB=AAB37912.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 66.6
(-3)
A 		90.8
(1.4)
A 		91.9
(1.6)
A 		99.4
(3)
A 		33
B 30.2
(-2.1)
A 		128.6
(3)
A 		96.5
(1.3)
A 		13.9
(-3)
A 		115
C 50.4
(-3)
A 		119
(3)
A 		66.2
(-1.6)
A 		91.8
(0.6)
A 		69
avr 49.1
(-3) 		112.8
(3) 		84.9
(0.4) 		68.4
(-1.2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 14.1
(-3)
A 		58.4
(2.3)
A 		57.7
(2.2)
A 		54.7
(1.9)
A 		21.9
(-2.1)
A 		64.3
(3)
A 		50
B 40.2
(-3)
A 		62.6
(-0.1)
A 		53.3
(-1.3)
A 		63.3
(0)
A 		53.3
(-1.3)
A 		86.1
(3)
A 		46
C 5.8
(-3)
A 		58.8
(0.2)
A 		105.8
(3)
A 		91.5
(2.1)
A 		25.5
(-1.8)
A 		43.2
(-0.8)
A 		100
avr 20
(-3) 		59.9
(1.6) 		72.3
(3) 		69.8
(2.7) 		33.6
(-1.4) 		64.5
(2.1) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 24.3
(3)
A 		19.7
(0.2)
A 		24
(2.8)
A 		14.5
(-3)
A 		10
B 9.6
(-1.6)
A 		31.8
(3)
A 		22.4
(1)
A 		3
(-3)
A 		29
C 16.7
(-2.6)
A 		34.2
(3)
A 		23.1
(-0.6)
A 		15.5
(-3)
A 		19
avr 16.9
(-1) 		28.6
(3) 		23.2
(1.2) 		11
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.6
(-3)
A 		20.8
(3)
A 		12.6
(0.3)
A 		13.9
(0.7)
A 		6.6
(-1.7)
A 		15.7
(1.3)
A 		18
B 14
(-2.7)
A 		20.8
(-0.5)
A 		12.9
(-3)
A 		16.8
(-1.8)
A 		21.7
(-0.3)
A 		32.1
(3)
A 		19
C 2.2
(-3)
A 		17.9
(0.8)
A 		26.9
(3)
A 		18.4
(0.9)
A 		8.3
(-1.5)
A 		14.5
(-0)
A 		25
avr 6.3
(-3) 		19.8
(2.6) 		17.5
(1.6) 		16.4
(1.2) 		12.2
(-0.6) 		20.8
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4741
Sequence Type Exemplar sequence
Representative Public ID ZC204.3 NCBI
Target Description ZC204.3 /REP_DB=WormBase Gene ID /WP=CE15088 /TR=P91543 /GB=AAB37912.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061627(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061627 NCBI Caenorhabditis elegans ZC204.3 (ZC204.3) mRNA, complete cds. 9/11 None
SNAP00000031414 ENSEMBL cdna:SNAP chromosome:CEL140:II:1655220:1656151:1 11/11 None
GENEFINDER00000031428 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1655144:1656151:1 9/11 None
ZC204.3 ENSEMBL cdna:known chromosome:CEL140:II:1655220:1656151:1 gene:ZC204.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1655218-1656150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.3
Entrez Gene 191109 Entrez gene
SwissProt P91543 EMBL-EBI
WormBase CE36349 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37912 Hypothetical protein ZC204.3 [Caenorhabditis elegans] ref|NP_494028.2| ZC204.3 [Caenorhabditis elegans] 1.0E-148
blast AAB37912 Hypothetical protein ZC204.3 [Caenorhabditis elegans] ref|NP_494028.2| ZC204.3 [Caenorhabditis elegans] 1.0E-133
blast AAB37912 Hypothetical protein ZC204.3 [Caenorhabditis elegans] ref|NP_494028.2| ZC204.3 [Caenorhabditis elegans] 1.0E-104
blast AAB37923 Hypothetical protein ZC204.11 [Caenorhabditis elegans] ref|NP_494027.1| ZC204.11 [Caenorhabditis elegans] 3.0E-52
blast AAB37923 Hypothetical protein ZC204.11 [Caenorhabditis elegans] ref|NP_494027.1| ZC204.11 [Caenorhabditis elegans] 4.0E-52
blast CAE56434 Hypothetical protein CBG24135 [Caenorhabditis briggsae] 2.0E-35
blast CAE56434 Hypothetical protein CBG24135 [Caenorhabditis briggsae] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.9E-28
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.9E-28
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.9E-28
Sequence
Target Sequence 
>C. ELEGANS:180243_AT
tatcatgcccaatccgaaactcagactaataagttcaccgttagacgccagccgtttccc
acagggcaagtatcaaaggcataagtgtgctaggtatgatctgtatctcgttgcgcttga
aactccactagccgagtacgagaaaatgttctccgagtcggaggataccgatgcggttct
ggttgttgaagataagcggcttcacgtgaataaagagtttctgagccttcactccaccta
tttcgctgaacttttcaagaaatctgagatcacaattgaagatcttagctatgaagattt
tggtcttctcatgagcaacatctacccaaaagttatcttcccaaatgacttcactgctga
aaagattctcgaattggctgtccgcttcaaagttccagctgcagtcgcacttgtcgaaaa
tcaactactgcaccattcaactctctcacacggaaaactgttgttgctcgccgataaata
cgagatgcatagattatccggccagcaagttcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCATGCCCAATCCGAAACTCAGA 479 659 165 Antisense
ATAAGTTCACCGTTAGACGCCAGCC 373 25 193 Antisense
AGCCGTTTCCCACAGGGCAAGTATC 33 1 214 Antisense
AGGTATGATCTGTATCTCGTTGCGC 622 57 256 Antisense
TCGTTGCGCTTGAAACTCCACTAGC 606 603 272 Antisense
AAAGAGTTTCTGAGCCTTCACTCCA 384 123 376 Antisense
GTTATCTTCCCAAATGACTTCACTG 583 447 496 Antisense
GGCTGTCCGCTTCAAAGTTCCAGCT 204 541 540 Antisense
AAATCAACTACTGCACCATTCAACT 248 117 582 Antisense
AAAACTGTTGTTGCTCGCCGATAAA 302 131 618 Antisense
AGATTATCCGGCCAGCAAGTTCGTA 636 61 655 Antisense
Sequence Source Affymetrix Proprietary Database