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[180242_at] 7TM chemoreceptor, srsx family

Description C04E6.2 /REP_DB=WormBase Gene ID /WP=CE07907 /TR=O01473 /GB=AAK39146.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 13      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 53.6
(-1.6)
A 		38.5
(-2.3)
A 		25.4
(-3)
A 		142.4
(3)
P 		117
B 67.4
(3)
A 		52.1
(0.2)
A 		34.8
(-3)
A 		59.1
(1.5)
A 		33
C 59.8
(1)
A 		35.1
(-1.1)
A 		12.1
(-3)
A 		83.1
(3)
P 		71
avr 60.3
(0.1) 		41.9
(-1.5) 		24.1
(-3) 		94.9
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 68
(2.7)
A 		58.7
(1.4)
A 		69.7
(3)
A 		46.3
(-0.5)
A 		41.7
(-1.2)
A 		29.3
(-3)
A 		40
B 25.3
(-3)
A 		44.2
(-0.3)
A 		67
(3)
A 		33.4
(-1.8)
A 		51.7
(0.8)
A 		30.5
(-2.3)
A 		42
C 45.6
(-1.8)
A 		48.9
(-1.2)
A 		68.7
(2.9)
A 		69.3
(3)
A 		39.9
(-3)
A 		45.8
(-1.8)
A 		29
avr 46.3
(-1) 		50.6
(-0.2) 		68.5
(3) 		49.7
(-0.4) 		44.4
(-1.3) 		35.2
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.5
(2.5)
A 		8.3
(-2.3)
A 		6.6
(-3)
A 		20.8
(3)
P 		14
B 21.5
(3)
A 		12.9
(-0.9)
A 		8.1
(-3)
A 		12.6
(-1)
A 		13
C 19.8
(3)
A 		10.1
(-0.7)
A 		4.2
(-3)
A 		14
(0.8)
P 		16
avr 20.3
(3) 		10.4
(-1.2) 		6.3
(-3) 		15.8
(1.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 12.5
(-0.7)
A 		20.9
(3)
A 		15.2
(0.5)
A 		11.7
(-1)
A 		12.6
(-0.6)
A 		7.1
(-3)
A 		14
B 8.8
(-3)
A 		14.7
(-0.1)
A 		16.3
(0.7)
A 		8.8
(-3)
A 		21
(3)
A 		11.4
(-1.7)
A 		12
C 16.9
(2.2)
A 		14.9
(-0.4)
A 		17.5
(3)
A 		13.9
(-1.7)
A 		12.9
(-3)
A 		15.3
(0.1)
A 		5
avr 12.7
(-1.5) 		16.8
(3) 		16.3
(2.5) 		11.5
(-2.8) 		15.5
(1.6) 		11.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11582
Sequence Type Exemplar sequence
Representative Public ID C04E6.2 NCBI
Target Description C04E6.2 /REP_DB=WormBase Gene ID /WP=CE07907 /TR=O01473 /GB=AAK39146.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072142 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-18) (srsx-18) mRNA, complete cds. 11/11 None
C04E6.2 ENSEMBL cdna:known chromosome:CEL140:V:5925139:5926891:1 gene:C04E6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5925138-5926891(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-18
Ensembl C04E6.2
Entrez Gene 182200 Entrez gene
SwissProt O01473 EMBL-EBI
WormBase CE07907 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39146 Serpentine receptor, class sx protein 18 [Caenorhabditis elegans] ref|NP_504543.1| Serpentine Receptor, class SX family member (srsx-18) [Caenorhabditis elegans] 1.0E-163
blast CAE64544 Hypothetical protein CBG09288 [Caenorhabditis briggsae] 1.0E-144
blast AAB65875 Serpentine receptor, class sx protein 17 [Caenorhabditis elegans] ref|NP_504544.2| Serpentine Receptor, class SX family member (srsx-17) [Caenorhabditis elegans] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504543.1 7 10-32,43-65,80-102,123-145,165-187,221-243,258-275
C04E6.2 7 10-32,43-65,80-102,123-145,165-187,221-243,258-275
Sequence
Target Sequence 
>C. ELEGANS:180242_AT
attgacctacttcttgctgttataatgcctataagacacaagctttggcagcgagggcca
tatcttctgatactctgtacgcctccagtgatattttctacctttgcaattttcattgag
caactttacataaatcacgagaatttactcatgtgcaccgtatctcttgctgctccaagg
aaagttcgattttggggcactataatcacattttcaacggttttattggcagttgcattg
atacttgtcacagctgtaaaggtgcatattaacgaacaatcatcttcatctccgttcatt
cgacattcaagtacttcaaccaaaacatcaagaagctcagaagtaaaacttctgaaatcg
cttgccactttgatattctttttcatatgttcatggacaatgtcagtaattttattccat
gtggcaatgtatttcgatagctccattggatatcaatttcataaatacacatttatactc
caactaccaacattttgccaaaacttttttgtcacagcgctcagatctcctcggtatgca
cgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGACCTACTTCTTGCTGTTATAA 290 3 316 Antisense
ATATCTTCTGATACTCTGTACGCCT 181 21 375 Antisense
ACGCCTCCAGTGATATTTTCTACCT 416 91 394 Antisense
ATTTACTCATGTGCACCGTATCTCT 672 15 458 Antisense
CGTATCTCTTGCTGCTCCAAGGAAA 281 247 474 Antisense
ATCTCCGTTCATTCGACATTCAAGT 651 33 603 Antisense
AAAACTTCTGAAATCGCTTGCCACT 206 131 660 Antisense
GCTTGCCACTTTGATATTCTTTTTC 63 307 675 Antisense
ACACATTTATACTCCAACTACCAAC 334 109 782 Antisense
AACTTTTTTGTCACAGCGCTCAGAT 611 137 817 Antisense
CTCAGATCTCCTCGGTATGCACGAG 360 229 835 Antisense
Sequence Source Affymetrix Proprietary Database