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[180240_at]

Description T23F4.2 /REP_DB=WormBase Gene ID /WP=CE14086 /TR=O17261 /GB=AAB71034.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 40      6grp_total > 07      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 723
1 2 3 4 range
A 1195.4
(0.9)
P 		778.9
(-3)
P 		807
(-2.7)
P 		1415.3
(3)
P 		636
B 1379.3
(2.7)
P 		740.8
(-2.8)
P 		718.5
(-3)
P 		1410.6
(3)
P 		692
C 1212.7
(1.6)
P 		773.9
(-2.3)
P 		692.2
(-3)
P 		1364
(3)
P 		672
avr 1262.5
(1.8) 		764.5
(-2.8) 		739.2
(-3) 		1396.6
(3) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 1180.2
(3)
P 		767.1
(-0.9)
P 		619.7
(-2.3)
P 		690.8
(-1.6)
P 		546.6
(-3)
P 		609.3
(-2.4)
P 		634
B 868.2
(3)
P 		615.4
(-0.5)
P 		439.4
(-3)
P 		481.9
(-2.4)
P 		542
(-1.6)
P 		441.5
(-3)
P 		429
C 938.1
(3)
P 		751.3
(0.6)
P 		811.3
(1.3)
P 		587.1
(-1.6)
P 		480.2
(-3)
P 		614
(-1.2)
P 		458
avr 995.5
(3) 		711.3
(-0.6) 		623.5
(-1.7) 		586.6
(-2.2) 		522.9
(-3) 		554.9
(-2.6) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 435.3
(3)
P 		169.1
(-3)
P 		211
(-2.1)
P 		207.2
(-2.1)
P 		266
B 439.8
(3)
P 		183
(-2.6)
P 		166.5
(-3)
P 		300.6
(-0.1)
P 		273
C 401.4
(3)
P 		222.5
(-3)
P 		241.3
(-2.4)
P 		230
(-2.7)
P 		179
avr 425.5
(3) 		191.5
(-3) 		206.3
(-2.6) 		245.9
(-1.6) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 217.6
(0.6)
P 		272.8
(3)
P 		135
(-3)
P 		175.2
(-1.2)
P 		164.9
(-1.7)
P 		148.3
(-2.4)
P 		138
B 302.1
(3)
P 		204.8
(0)
P 		106.7
(-3)
P 		127.6
(-2.4)
P 		220.2
(0.5)
P 		164.6
(-1.2)
P 		195
C 347.7
(3)
P 		229.2
(-0.1)
P 		206.5
(-0.7)
P 		118.1
(-3)
P 		155.4
(-2)
P 		205.5
(-0.7)
P 		230
avr 289.1
(3) 		235.6
(0.8) 		149.4
(-2.6) 		140.3
(-3) 		180.2
(-1.4) 		172.8
(-1.7) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4460
Sequence Type Exemplar sequence
Representative Public ID T23F4.2 NCBI
Target Description T23F4.2 /REP_DB=WormBase Gene ID /WP=CE14086 /TR=O17261 /GB=AAB71034.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061522(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061522 NCBI Caenorhabditis elegans T23F4.2 (T23F4.2) mRNA, complete cds. 10/11 None
GENEFINDER00000024155 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1163613:1165230:1 10/11 None
T23F4.2 ENSEMBL cdna:known chromosome:CEL140:II:1163613:1165444:1 gene:T23F4.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1163611-1165229(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F4.2
Entrez Gene 173501 Entrez gene
SwissProt O17261 EMBL-EBI
WormBase CE32070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71034 Hypothetical protein T23F4.2 [Caenorhabditis elegans] ref|NP_493923.2| T23F4.2 [Caenorhabditis elegans] 1.0E-118
blast AAB71034 Hypothetical protein T23F4.2 [Caenorhabditis elegans] ref|NP_493923.2| T23F4.2 [Caenorhabditis elegans] 1.0E-112
blast CAE62983 Hypothetical protein CBG07207 [Caenorhabditis briggsae] 1.0E-100
blast CAE62983 Hypothetical protein CBG07207 [Caenorhabditis briggsae] 2.0E-95
Sequence
Target Sequence 
>C. ELEGANS:180240_AT
tacgcaactgctccaaacctgttgagcagagacacttctgtcagaaaacgtggggatagt
gaatcagcaaatgcttcccgccacaactctaccaagcgtactccatcatggcgtccactt
ttcactggacagggtaaaaagaaaagttcaaagcccaaatatctacaggatggccggaaa
atgacagaagatgggcatgacgagccaaataagctttgggaagagcttttcctccgttca
ttcgcccacaaaattgagcaggaaatctcgtcgccgagcccacttgaagcacacaaaaat
ctgaattcggaactctcaaaactcaatattcaagaaaaaattccagaatttttagaaatt
tcagacaaatccttctaccgatctacatattcgttggtgtcgcccacgcggatagaaaat
actgattttgaggagttggagaggatcgagaatcaggagaagactcaggatgactcaaaa
cccaaccgctccaactcatcaacagaacggcccagttctcaaatttgcagtgtttttctt
ccatttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGCAACTGCTCCAAACCTGTTGA 105 649 58 Antisense
GTGAATCAGCAAATGCTTCCCGCCA 386 481 116 Antisense
TACCAAGCGTACTCCATCATGGCGT 657 649 147 Antisense
CATGGCGTCCACTTTTCACTGGACA 92 209 164 Antisense
TCCGTTCATTCGCCCACAAAATTGA 407 595 290 Antisense
TGAGCAGGAAATCTCGTCGCCGAGC 596 567 312 Antisense
CAGACAAATCCTTCTACCGATCTAC 260 203 419 Antisense
TCTACATATTCGTTGGTGTCGCCCA 277 613 439 Antisense
CGCTCCAACTCATCAACAGAACGGC 180 255 544 Antisense
ACGGCCCAGTTCTCAAATTTGCAGT 73 97 564 Antisense
TTGCAGTGTTTTTCTTCCATTTATC 378 703 582 Antisense
Sequence Source Affymetrix Proprietary Database