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[180238_at]

Description C09E7.5 /REP_DB=WormBase Gene ID /WP=CE25769 /TR=Q9N5Y9 /GB=AAF60370.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 5.8
(-3)
A 		11.8
(3)
A 		6.8
(-2)
A 		9
(0.2)
A 		6
B 4.6
(-1.8)
A 		11.1
(3)
A 		7.1
(0.1)
A 		2.9
(-3)
A 		8
C 5.1
(-2.7)
A 		34
(3)
A 		3.8
(-3)
A 		11.8
(-1.4)
A 		30
avr 5.2
(-3) 		19
(3) 		5.9
(-2.7) 		7.9
(-1.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 6.7
(-2.5)
A 		5.9
(-2.7)
A 		6.4
(-2.6)
A 		41.9
(3)
A 		3.7
(-3)
A 		5.1
(-2.8)
A 		38
B 3.1
(-2.8)
A 		3.8
(-2.7)
A 		24.8
(3)
A 		2.5
(-3)
A 		6.5
(-1.9)
A 		3.2
(-2.8)
A 		22
C 6.2
(-2.2)
A 		19.8
(-0.1)
A 		8.3
(-1.9)
A 		40.3
(3)
A 		4.6
(-2.4)
A 		0.9
(-3)
A 		39
avr 5.3
(-2.5) 		9.8
(-1.4) 		13.2
(-0.6) 		28.2
(3) 		4.9
(-2.6) 		3.1
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.1
(0.7)
A 		2.6
(3)
A 		1.8
(-0.7)
A 		1.3
(-3)
A 		1
B 1.5
(-0.4)
A 		2.7
(3)
A 		1.6
(-0.1)
A 		0.6
(-3)
A 		2
C 1.7
(-2.7)
A 		9.8
(3)
A 		1.3
(-3)
A 		2
(-2.5)
A 		9
avr 1.8
(-2.2) 		5
(3) 		1.6
(-2.5) 		1.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		2.1
(-2.4)
A 		1.4
(-2.8)
A 		10.6
(3)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		10
B 1.1
(-2.5)
A 		1.3
(-2.3)
A 		6
(3)
A 		0.7
(-3)
A 		2.7
(-0.7)
A 		1.2
(-2.4)
A 		5
C 2.3
(-1.5)
A 		6
(1.4)
A 		2.1
(-1.6)
A 		8.1
(3)
A 		1.5
(-2.1)
A 		0.3
(-3)
A 		8
avr 1.5
(-2.4) 		3.1
(-0.6) 		3.2
(-0.5) 		6.5
(3) 		1.8
(-2) 		0.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8088
Sequence Type Exemplar sequence
Representative Public ID C09E7.5 NCBI
Target Description C09E7.5 /REP_DB=WormBase Gene ID /WP=CE25769 /TR=Q9N5Y9 /GB=AAF60370.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066042 NCBI Caenorhabditis elegans C09E7.5 (C09E7.5) mRNA, complete cds. 11/11 None
SNAP00000042847 ENSEMBL cdna:SNAP chromosome:CEL140:III:6538054:6539985:-1 10/11 None
GENEFINDER00000042855 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6538054:6541290:-1 10/11 None
C09E7.5 ENSEMBL cdna:known chromosome:CEL140:III:6538054:6541290:-1 gene:C09E7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6538052-6541289(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09E7.5
Entrez Gene 182451 Entrez gene
SwissProt Q9N5Y9 EMBL-EBI
WormBase CE25769 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60370 Hypothetical protein C09E7.5 [Caenorhabditis elegans] ref|NP_498443.1| C09E7.5 [Caenorhabditis elegans] 0.0
blast AAF60370 Hypothetical protein C09E7.5 [Caenorhabditis elegans] ref|NP_498443.1| C09E7.5 [Caenorhabditis elegans] 3.0E-90
blast AAN63459 Hypothetical protein C09E7.8b [Caenorhabditis elegans] ref|NP_871695.1| C09E7.8b [Caenorhabditis elegans] 3.0E-77
blast AAN63458 Hypothetical protein C09E7.8a [Caenorhabditis elegans] ref|NP_498447.2| C09E7.8a [Caenorhabditis elegans] 3.0E-77
blast AAN63459 Hypothetical protein C09E7.8b [Caenorhabditis elegans] ref|NP_871695.1| C09E7.8b [Caenorhabditis elegans] 1.0E-46
blast AAN63458 Hypothetical protein C09E7.8a [Caenorhabditis elegans] ref|NP_498447.2| C09E7.8a [Caenorhabditis elegans] 1.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.7E-9
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.7E-9
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.7E-9
Sequence
Target Sequence 
>C. ELEGANS:180238_AT
ggttcatgaactgatcgctctgaccaggactgctaaaatccaacgattcgcattgttgga
gcttgagaactacaaaaccaacatagacaattacttggaaacagttgaaacgaatattca
aaaagttaaaagaaactcactggatctcgaaccacttcctgaggaaccaaaaatttccga
taaatttatgagattgtacttgaatgaaaaggagaaacaaccatccacatcttcaaaagc
caagtttccagacaaacctggaatattagttggaaatttcagaaagtctccaggaaaaaa
taatacggtcacagtttctgctcccagctccgagttggacgacactgaatgtgcaatttg
tttggaagagatgtacaatttcaaagagacgataaaatgtgaatgtagacggcgtttcca
ttcaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCATGAACTGATCGCTCTGACC 399 507 987 Antisense
ATCGCTCTGACCAGGACTGCTAAAA 555 37 1000 Antisense
GGACTGCTAAAATCCAACGATTCGC 638 519 1013 Antisense
ATTCGCATTGTTGGAGCTTGAGAAC 311 5 1032 Antisense
GAAACTCACTGGATCTCGAACCACT 640 355 1118 Antisense
GATCTCGAACCACTTCCTGAGGAAC 158 417 1129 Antisense
GAAACAACCATCCACATCTTCAAAA 32 357 1200 Antisense
ATCTTCAAAAGCCAAGTTTCCAGAC 98 27 1215 Antisense
TAATACGGTCACAGTTTCTGCTCCC 349 635 1287 Antisense
GTTGGACGACACTGAATGTGCAATT 135 435 1320 Antisense
TGTAGACGGCGTTTCCATTCAAAAT 163 561 1390 Antisense
Sequence Source Affymetrix Proprietary Database