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[180236_at]

Description ZC190.8 /REP_DB=WormBase Gene ID /WP=CE18430 /TR=O76705 /GB=AAC26958.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 51.1
(-2.2)
A 		15.4
(-3)
A 		31.3
(-2.6)
A 		284.3
(3)
P 		269
B 54
(-2.8)
A 		90.4
(-1.8)
A 		48.9
(-3)
A 		249.8
(3)
P 		201
C 43.9
(-3)
A 		61.5
(-2.5)
A 		78.8
(-2.1)
A 		275.5
(3)
P 		232
avr 49.7
(-3) 		55.8
(-2.8) 		53
(-2.9) 		269.9
(3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 76.2
(1.2)
A 		34
(-2)
A 		59
(-0.1)
A 		50
(-0.8)
A 		21.4
(-3)
A 		99.2
(3)
A 		78
B 44.7
(-1.4)
A 		35.9
(-3)
A 		52.9
(0.1)
A 		68.3
(3)
A 		45.9
(-1.1)
A 		42
(-1.9)
P 		32
C 21.1
(-3)
A 		41.5
(-0.6)
A 		29.1
(-2)
A 		27.7
(-2.2)
A 		43.4
(-0.4)
A 		71.6
(3)
P 		51
avr 47.3
(-1.2) 		37.1
(-3) 		47
(-1.2) 		48.7
(-0.9) 		36.9
(-3) 		70.9
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 18.6
(-0.6)
A 		3.4
(-3)
A 		8.2
(-2.2)
A 		41.6
(3)
P 		38
B 17.2
(-2.2)
A 		22.3
(-1.4)
A 		11.3
(-3)
A 		53.2
(3)
P 		42
C 14.5
(-3)
A 		17.7
(-2.4)
A 		27.5
(-0.6)
A 		46.5
(3)
P 		32
avr 16.8
(-2.6) 		14.5
(-3) 		15.7
(-2.8) 		47.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 14.1
(-0.4)
A 		12.1
(-1.1)
A 		12.8
(-0.8)
A 		12.7
(-0.9)
A 		6.4
(-3)
A 		24.1
(3)
A 		18
B 15.5
(0.2)
A 		11.9
(-3)
A 		12.8
(-2.2)
A 		18.1
(2.5)
A 		18.7
(3)
A 		15.7
(0.4)
P 		7
C 7.8
(-2.3)
A 		12.7
(-0.7)
A 		7.4
(-2.4)
A 		5.6
(-3)
A 		14.1
(-0.2)
A 		24
(3)
P 		18
avr 12.5
(-2.1) 		12.2
(-2.3) 		11
(-3) 		12.1
(-2.4) 		13.1
(-1.8) 		21.3
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11560
Sequence Type Exemplar sequence
Representative Public ID ZC190.8 NCBI
Target Description ZC190.8 /REP_DB=WormBase Gene ID /WP=CE18430 /TR=O76705 /GB=AAC26958.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072838 NCBI Caenorhabditis elegans ZC190.8 (ZC190.8) mRNA, complete cds. 11/11 None
SNAP00000000636 ENSEMBL cdna:SNAP chromosome:CEL140:V:8689598:8694624:-1 10/11 None
GENEFINDER00000000643 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8689598:8695822:-1 11/11 None
ZC190.8 ENSEMBL cdna:known chromosome:CEL140:V:8689598:8691023:-1 gene:ZC190.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8689598-8691024(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC190.8
Entrez Gene 191097 Entrez gene
SwissProt O76705 EMBL-EBI
WormBase CE18430 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26958 Hypothetical protein ZC190.8 [Caenorhabditis elegans] ref|NP_505239.1| ZC190.8 [Caenorhabditis elegans] 1.0E-116
blast AAC26958 Hypothetical protein ZC190.8 [Caenorhabditis elegans] ref|NP_505239.1| ZC190.8 [Caenorhabditis elegans] 1.0E-108
blast AAC26958 Hypothetical protein ZC190.8 [Caenorhabditis elegans] ref|NP_505239.1| ZC190.8 [Caenorhabditis elegans] 2.0E-92
blast CAE58401 Hypothetical protein CBG01530 [Caenorhabditis briggsae] 1.0E-19
blast CAE58401 Hypothetical protein CBG01530 [Caenorhabditis briggsae] 2.0E-19
blast CAE58401 Hypothetical protein CBG01530 [Caenorhabditis briggsae] 5.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505239.1 1 20-42
ZC190.8 1 20-42
GENEFINDER00000000643 1 71-93
Sequence
Target Sequence 
>C. ELEGANS:180236_AT
ttttccgtactgctttcattttcataattacgggatttattcttggatactgtttgcatg
tgaaagatccgccatcagacaaacgattaagtccagaatcttcgaagcgtaattctaatg
atcagaaagctagatcagttcgtgatccttcagtaaaacaaatctcggctcagggaaact
cacctccacttcctaaaacacctccagtagagttattgaaacctccgccatttgaacttc
aaaaagaatttaaaaacagtcatcgatcagttcgtgagaaaagtggaaataaaacccatg
cgaaagagagttctcgacaccgttaccgtcagtttccacatttggacaacagtcatcaga
cagaattcaagaagtctcacagatcaatccgtgaaaaatcaaacagaaaatcaactgatt
catcgactgagctaggatctccgacaaattctcaatactcaactactacacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCGTACTGCTTTCATTTTCAT 429 677 89 Antisense
GCATGTGAAAGATCCGCCATCAGAC 279 311 144 Antisense
ATCAGTTCGTGATCCTTCAGTAAAA 416 29 222 Antisense
AAATCTCGGCTCAGGGAAACTCACC 405 117 248 Antisense
CACTTCCTAAAACACCTCCAGTAGA 339 101 275 Antisense
TATTGAAACCTCCGCCATTTGAACT 700 663 302 Antisense
GAAAGAGAGTTCTCGACACCGTTAC 385 357 390 Antisense
TTACCGTCAGTTTCCACATTTGGAC 406 681 411 Antisense
CATCGACTGAGCTAGGATCTCCGAC 554 211 509 Antisense
GGATCTCCGACAAATTCTCAATACT 592 511 523 Antisense
TTCTCAATACTCAACTACTACACGG 303 689 537 Antisense
Sequence Source Affymetrix Proprietary Database