[Home] | [Total List]

[180235_at] 7TM chemoreceptor, srt family

Description C16D9.7 /REP_DB=WormBase Gene ID /WP=CE06843 /TR=Q22901 /GB=AAB18286.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 04      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 4.5
(-3)
A 		9
(-2.5)
A 		4.1
(-3)
A 		60.8
(3)
A 		57
B 4.5
(-3)
A 		5.1
(-2.8)
A 		4.3
(-3)
A 		33.4
(3)
A 		29
C 35.2
(0.5)
A 		4.4
(-2.8)
A 		3
(-3)
A 		58.4
(3)
A 		55
avr 14.7
(-1.6) 		6.2
(-2.7) 		3.8
(-3) 		50.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 43.2
(3)
A 		23.7
(-0.1)
A 		19.4
(-0.8)
A 		5.2
(-3)
A 		8.2
(-2.5)
A 		21.3
(-0.5)
A 		38
B 10.9
(-0.3)
A 		17.6
(1.9)
A 		20.9
(2.9)
A 		10.8
(-0.3)
A 		21.2
(3)
A 		2.4
(-3)
A 		19
C 15.2
(-0.2)
A 		25.6
(2.5)
A 		27.4
(3)
A 		11.5
(-1.2)
A 		4.6
(-3)
A 		14.6
(-0.4)
A 		23
avr 23.1
(3) 		22.3
(2.7) 		22.6
(2.8) 		9.2
(-3) 		11.3
(-2.1) 		12.8
(-1.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.6
(-2.6)
A 		1.9
(-2.4)
A 		1.1
(-3)
A 		8.9
(3)
A 		8
B 1.5
(-2.5)
A 		1.3
(-2.7)
A 		1
(-3)
A 		7.1
(3)
A 		6
C 11.6
(3)
A 		1.3
(-2.8)
A 		1
(-3)
A 		9.9
(2)
A 		11
avr 4.9
(0.1) 		1.5
(-2.6) 		1
(-3) 		8.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8
(2.7)
A 		8.4
(3)
A 		4.2
(-0.5)
A 		1.3
(-3)
A 		2.5
(-2)
A 		5.2
(0.3)
A 		7
B 3.8
(-0.7)
A 		5.9
(0.9)
A 		5.1
(0.3)
A 		2.9
(-1.4)
A 		8.6
(3)
A 		0.9
(-3)
A 		8
C 5.6
(0.9)
A 		7.8
(3)
A 		7
(2.2)
A 		2.3
(-2.2)
A 		1.5
(-3)
A 		4.9
(0.2)
A 		6
avr 5.8
(1.2) 		7.4
(3) 		5.4
(0.7) 		2.2
(-3) 		4.2
(-0.7) 		3.7
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11554
Sequence Type Exemplar sequence
Representative Public ID C16D9.7 NCBI
Target Description C16D9.7 /REP_DB=WormBase Gene ID /WP=CE06843 /TR=Q22901 /GB=AAB18286.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072726(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072726 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-25) (srt-25) mRNA, complete cds. 10/11 None
GENEFINDER00000043387 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8259428:8260666:-1 11/11 None
C16D9.7 ENSEMBL cdna:known chromosome:CEL140:V:8259421:8260544:-1 gene:C16D9.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043379 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8259428-8260378(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-25
Ensembl C16D9.7
Entrez Gene 182688 Entrez gene
SwissProt Q22901 EMBL-EBI
WormBase CE37955 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18286 Serpentine receptor, class t protein 25 [Caenorhabditis elegans] ref|NP_505127.2| Serpentine Receptor, class T family member (srt-25) [Caenorhabditis elegans] 1.0E-159
blast AAB18286 Serpentine receptor, class t protein 25 [Caenorhabditis elegans] ref|NP_505127.2| Serpentine Receptor, class T family member (srt-25) [Caenorhabditis elegans] 1.0E-142
blast CAE66090 Hypothetical protein CBG11307 [Caenorhabditis briggsae] 1.0E-113
blast AAC19253 Serpentine receptor, class t protein 26 [Caenorhabditis elegans] ref|NP_503736.2| Serpentine Receptor, class T family member (srt-26) [Caenorhabditis elegans] 1.0E-112
blast CAE66090 Hypothetical protein CBG11307 [Caenorhabditis briggsae] 1.0E-111
blast AAC19253 Serpentine receptor, class t protein 26 [Caenorhabditis elegans] ref|NP_503736.2| Serpentine Receptor, class T family member (srt-26) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 8.6E-112
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 4.3E-118
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505127.2 6 15-37,42-59,69-91,112-134,161-183,217-239
C16D9.7 6 15-37,42-59,69-91,112-134,161-183,217-239
GENEFINDER00000043387 5 57-79,94-116,137-159,186-208,242-264
Sequence
Target Sequence 
>C. ELEGANS:180235_AT
tatgaacattgcaaactcgtccctttcccgctacttttttgacgggtatcgaacttatat
agctctacttgctccaataatttatggcctctattttgttttcttcacaccaacctgtat
gttttcctctcggtactatgcctggttctacgatccatttatttttcctaacatgacttc
acagtataccaacattccacatggagtgaataatctgatgataatgtgcggaacgtttgt
attttacggatacattacgatccttatttggaaagcgagaaaaactggaaactcgcacga
cttgagtagtcagtcctatcaaattctgtatcagtcgatagctgtttgttttatcaatca
agtgtcatctagtgtctatgtaataatgaattttgtcctggttccagaatggattatagt
tcttgcacaactactatggcaacttgatcatggaagcccagttataatctacttgactat
gaatccaacaattcgttcaagatttttcgagaaaataaaatggcgaatgatgcacgtcgt
cggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGAACATTGCAAACTCGTCCCTT 439 657 198 Antisense
ATATAGCTCTACTTGCTCCAATAAT 349 19 254 Antisense
TTATGGCCTCTATTTTGTTTTCTTC 285 681 279 Antisense
TCACACCAACCTGTATGTTTTCCTC 475 627 302 Antisense
TCGGTACTATGCCTGGTTCTACGAT 38 605 327 Antisense
TTCTACGATCCATTTATTTTTCCTA 467 691 343 Antisense
GACTTCACAGTATACCAACATTCCA 45 373 372 Antisense
GAAAAACTGGAAACTCGCACGACTT 53 355 476 Antisense
GGCAACTTGATCATGGAAGCCCAGT 281 533 635 Antisense
GAAGCCCAGTTATAATCTACTTGAC 707 341 650 Antisense
ATGGCGAATGATGCACGTCGTCGGT 308 53 717 Antisense
Sequence Source Affymetrix Proprietary Database