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[180234_at]

Description ZC204.1 /REP_DB=WormBase Gene ID /WP=CE15084 /TR=P91548 /GB=AAB37910.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 25.4
(-0.8)
A 		63.1
(3)
A 		15.8
(-1.8)
A 		3.9
(-3)
A 		59
B 26.5
(3)
A 		10.5
(-2.1)
A 		7.6
(-3)
A 		9.5
(-2.4)
A 		19
C 32.5
(-3)
A 		35.4
(0.4)
A 		34.8
(-0.3)
A 		37.6
(3)
A 		5
avr 28.1
(0.5) 		36.3
(3) 		19.4
(-2.3) 		17
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 15.1
(-1)
A 		6.1
(-2.6)
A 		3.7
(-3)
A 		38.3
(3)
A 		8.7
(-2.1)
A 		10.5
(-1.8)
A 		35
B 13.9
(3)
A 		10.6
(0.4)
A 		11.9
(1.4)
A 		11.9
(1.4)
A 		6.2
(-3)
A 		9.3
(-0.6)
A 		8
C 8.4
(-2.3)
A 		30.8
(2.1)
A 		35.1
(3)
A 		19.3
(-0.1)
A 		4.9
(-3)
A 		19.7
(-0.1)
A 		30
avr 12.5
(-0.9) 		15.8
(0.3) 		16.9
(0.7) 		23.2
(3) 		6.6
(-3) 		13.2
(-0.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.2
(0.9)
A 		13.7
(3)
A 		4.1
(-1.4)
A 		0.6
(-3)
A 		13
B 8.5
(3)
A 		2.6
(-2.3)
A 		1.8
(-3)
A 		2
(-2.8)
A 		7
C 10.8
(1.7)
A 		10.2
(1)
A 		12.1
(3)
A 		6.3
(-3)
A 		6
avr 9.5
(3) 		8.8
(2.4) 		6
(-0.2) 		3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.8
(-1.7)
A 		2.2
(-2.1)
A 		0.8
(-3)
A 		9.7
(3)
A 		2.6
(-1.8)
A 		2.6
(-1.8)
A 		9
B 4.9
(3)
A 		3.5
(-0.5)
A 		2.9
(-2)
A 		3.2
(-1.3)
A 		2.5
(-3)
A 		3.5
(-0.5)
A 		2
C 3.1
(-1.8)
A 		9.4
(3)
A 		8.9
(2.6)
A 		3.9
(-1.2)
A 		1.6
(-3)
A 		6.6
(0.8)
A 		8
avr 3.6
(-0.5) 		5
(1.9) 		4.2
(0.5) 		5.6
(3) 		2.2
(-3) 		4.2
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4113
Sequence Type Exemplar sequence
Representative Public ID ZC204.1 NCBI
Target Description ZC204.1 /REP_DB=WormBase Gene ID /WP=CE15084 /TR=P91548 /GB=AAB37910.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061632 NCBI Caenorhabditis elegans ZC204.1 (ZC204.1) mRNA, complete cds. 11/11 None
SNAP00000031419 ENSEMBL cdna:SNAP chromosome:CEL140:II:1666328:1667485:1 11/11 None
GENEFINDER00000031426 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1666328:1667485:1 11/11 None
ZC204.1 ENSEMBL cdna:known chromosome:CEL140:II:1666328:1667485:1 gene:ZC204.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1666326-1667484(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC204.1
Entrez Gene 191108 Entrez gene
SwissProt P91548 EMBL-EBI
WormBase CE15084 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37910 Hypothetical protein ZC204.1 [Caenorhabditis elegans] ref|NP_494033.1| ZC204.1 [Caenorhabditis elegans] 5.0E-79
blast AAB69954 Prion-like-(q/n-rich)-domain-bearing protein protein 98 [Caenorhabditis elegans] ref|NP_503259.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-98) [Caenorhabditis elegans] 8.0E-32
blast NP_503225 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-60) [Caenorhabditis elegans] gb|AAC69075.1| Prion-like-(q/n-rich)-domain-bearing protein protein 60 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 2.1E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494033.1 1 5-22
ZC204.1 1 5-22
SNAP00000031419 1 5-22
GENEFINDER00000031426 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:180234_AT
aagatcatcctctattttcttgtcctggctgcgatcctcgatgttggactcgccagctac
gatagcccgaggttcttgaggaatcagccgagaagtgtgcagcaggggtactatgccatt
gcaaataatacccagttgagtttgaatcagaagcaaatggagctgcggcagtgggcgcag
gggcacaatttgttgaaccaatacatcacgttcgatcagaaacaatcccaacaagagcta
caaatgaaccaagccacggaccgcatcatctcccaactcccatccgttaaatctcaactc
aaggccattttggaccaggacaaccttacgggagcccaaattcaacaggccgtcggacag
ctggccgggaggtatccacagcagcttgcaactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATCATCCTCTATTTTCTTGTCC 601 155 19 Antisense
TGCGATCCTCGATGTTGGACTCGCC 649 583 48 Antisense
GCTACGATAGCCCGAGGTTCTTGAG 79 303 74 Antisense
GCAGCAGGGGTACTATGCCATTGCA 119 313 117 Antisense
TGGGCGCAGGGGCACAATTTGTTGA 309 553 190 Antisense
ACAAATGAACCAAGCCACGGACCGC 279 111 258 Antisense
AACTCCCATCCGTTAAATCTCAACT 596 139 293 Antisense
AGGCCATTTTGGACCAGGACAACCT 562 1 320 Antisense
GGGAGCCCAAATTCAACAGGCCGTC 482 493 348 Antisense
GTCGGACAGCTGGCCGGGAGGTATC 51 473 370 Antisense
GGTATCCACAGCAGCTTGCAACTCT 389 505 389 Antisense
Sequence Source Affymetrix Proprietary Database