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[180233_s_at]

Description C04E6.7 /REP_DB=WormBase Gene ID /WP=CE07912 /TR=O01464 /GB=AAK39140.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 24      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 71      6grp_total > 03      4grp_total > 13      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 488
1 2 3 4 range
A 405.6
(-0.2)
P 		382.2
(-0.5)
P 		176.5
(-3)
P 		664.6
(3)
P 		488
B 348.6
(-0.9)
P 		235.9
(-2.5)
P 		201.9
(-3)
P 		620
(3)
P 		418
C 536
(2.4)
P 		290.3
(-2.3)
P 		252.6
(-3)
P 		565.4
(3)
P 		313
avr 430.1
(0.2) 		302.8
(-1.6) 		210.3
(-3) 		616.7
(3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 364.7
(3)
P 		342.2
(2.1)
P 		314.6
(0.9)
P 		229.9
(-2.6)
P 		364.8
(3)
P 		220.2
(-3)
P 		145
B 450.5
(3)
P 		417.3
(0.6)
P 		367.7
(-3)
P 		369.5
(-2.9)
P 		431.5
(1.6)
P 		381.3
(-2)
P 		83
C 341.3
(-0.5)
P 		457.9
(2.5)
P 		240
(-3)
P 		479.6
(3)
P 		286.7
(-1.8)
P 		314.1
(-1.1)
P 		240
avr 385.5
(1.8) 		405.8
(3) 		307.4
(-2.9) 		359.7
(0.3) 		361
(0.3) 		305.2
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 147.7
(3)
P 		83
(-0.8)
P 		46.1
(-3)
P 		97.3
(0)
P 		102
B 111.2
(1.5)
P 		58.3
(-2.2)
P 		46.8
(-3)
P 		132.1
(3)
P 		85
C 177.4
(3)
P 		83.5
(-3)
P 		88
(-2.7)
P 		95.3
(-2.2)
P 		94
avr 145.4
(3) 		74.9
(-2) 		60.3
(-3) 		108.2
(0.4) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 67.2
(-1.8)
P 		121.7
(3)
P 		68.5
(-1.7)
P 		58.3
(-2.6)
P 		110.1
(2)
P 		53.6
(-3)
P 		68
B 156.7
(1.7)
P 		138.9
(0.5)
P 		89.3
(-3)
P 		97.9
(-2.4)
P 		175.3
(3)
P 		142.2
(0.7)
P 		86
C 126.5
(2)
P 		139.7
(3)
P 		61.1
(-3)
P 		96.4
(-0.3)
P 		92.8
(-0.6)
P 		105.1
(0.4)
P 		79
avr 116.8
(1.4) 		133.4
(3) 		73
(-3) 		84.2
(-1.9) 		126.1
(2.3) 		100.3
(-0.3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180233_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11504
Sequence Type Exemplar sequence
Representative Public ID C04E6.7 NCBI
Target Description C04E6.7 /REP_DB=WormBase Gene ID /WP=CE07912 /TR=O01464 /GB=AAK39140.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072133 NCBI Caenorhabditis elegans C04E6.7 (C04E6.7) mRNA, complete cds. 11/11 None
SNAP00000001264 ENSEMBL cdna:SNAP chromosome:CEL140:V:5895940:5897468:1 11/11 None
GENEFINDER00000001275 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5895940:5897468:1 11/11 None
C04E6.7 ENSEMBL cdna:known chromosome:CEL140:V:5895920:5897805:1 gene:C04E6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5895939-5897468(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E6.7
Entrez Gene 178976 Entrez gene
SwissProt O01464 EMBL-EBI
WormBase CE07912 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6260 DNA replication inferred from electronic annotation QuickGO AmiGO
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
3910 DNA ligase (ATP) activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39140 Hypothetical protein C04E6.7 [Caenorhabditis elegans] ref|NP_504534.1| C04E6.7 [Caenorhabditis elegans] 1.0E-127
blast CAE64552 Hypothetical protein CBG09298 [Caenorhabditis briggsae] 1.0E-122
blast NP_504508 K09H11.1 [Caenorhabditis elegans] gb|AAB52261.2| Hypothetical protein K09H11.1 [Caenorhabditis elegans] 1.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.1E-22
Sequence
Target Sequence 
>C. ELEGANS:180233_S_AT
gttattcgataattctctgatccctacactagttagcaaggaattgtcgagtattctccc
aaaaggatttcaagaagatttattaactggaatttacacagccaaggatttcgatagact
tttcctgtcggcttacaatcgaaagtttggctcacaagtggaaagtctcaagttcttctc
agccacggaatatgataacgatgctgtctacgaagaggcggtccttacagcgtgccagaa
acttcgagaacggggagtcaagacgattttaatgttggacacttatcatgttgacgagaa
aagaaatgggcgaagaattccgaatatggaaaaatactttgatcacgtcattgaatcatg
taaagaaggagtcaaaaagccggatccaagattttaccaaatcgcattagactgtgtaga
tgttcaaccagaggaagtaatttatattgacgactcaaaaattaattgtgaaagtgcagc
tgtgcttggtattcgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTCGATAATTCTCTGATCCCT 567 447 171 Antisense
CTCTGATCCCTACACTAGTTAGCAA 349 231 185 Antisense
GGAATTGTCGAGTATTCTCCCAAAA 154 535 210 Antisense
AGACTTTTCCTGTCGGCTTACAATC 684 69 286 Antisense
AAGTGGAAAGTCTCAAGTTCTTCTC 281 151 326 Antisense
GTTCTTCTCAGCCACGGAATATGAT 125 445 342 Antisense
GATGCTGTCTACGAAGAGGCGGTCC 690 411 370 Antisense
GTCCTTACAGCGTGCCAGAAACTTC 414 475 391 Antisense
GTTGGACACTTATCATGTTGACGAG 157 437 444 Antisense
AGCCGGATCCAAGATTTTACCAAAT 562 83 548 Antisense
TGCAGCTGTGCTTGGTATTCGATAT 1 579 645 Antisense
Sequence Source Affymetrix Proprietary Database