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[180232_at]

Description M02B7.5 /REP_DB=WormBase Gene ID /WP=CE12328 /TR=Q94287 /GB=AAB09130.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 21      6grp_total > 91      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 42.7
(-3)
P 		66.5
(0.5)
A 		83.7
(3)
A 		67.3
(0.6)
P 		41
B 73.4
(-1.6)
P 		74.6
(-1.5)
P 		58.9
(-3)
A 		121.1
(3)
P 		62
C 77.9
(0.5)
P 		84.9
(2.7)
P 		66.8
(-3)
P 		85.8
(3)
A 		19
avr 64.7
(-3) 		75.3
(-0.6) 		69.8
(-1.9) 		91.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 71.6
(-3)
M 		89.8
(-0.9)
P 		92.1
(-0.7)
A 		80.7
(-2)
P 		90.6
(-0.8)
P 		124.6
(3)
M 		53
B 108
(2.7)
P 		74.7
(-1.4)
P 		77.5
(-1.1)
A 		110.2
(3)
A 		92.6
(0.8)
M 		62.1
(-3)
P 		48
C 83.7
(-0.7)
P 		106.6
(1)
P 		71.2
(-1.7)
P 		131.6
(3)
M 		121.6
(2.2)
P 		54.8
(-3)
P 		77
avr 87.8
(-1.3) 		90.4
(-0.8) 		80.3
(-3) 		107.5
(3) 		101.6
(1.7) 		80.5
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.6
(-0.1)
P 		14.4
(-0.7)
A 		21.9
(3)
A 		9.8
(-3)
P 		12
B 23.4
(1.8)
P 		18.4
(-0.7)
P 		13.7
(-3)
A 		25.8
(3)
P 		12
C 25.8
(3)
P 		24.4
(2.3)
P 		23.3
(1.7)
P 		14.5
(-3)
A 		11
avr 21.6
(3) 		19.1
(-0.1) 		19.6
(0.6) 		16.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.2
(-3)
M 		32
(3)
P 		20.1
(-0.8)
A 		20.5
(-0.7)
P 		27.3
(1.5)
P 		30.3
(2.5)
M 		19
B 37.6
(3)
P 		24.9
(-1.1)
P 		18.8
(-3)
A 		29.2
(0.3)
A 		37.6
(3)
M 		23.1
(-1.6)
P 		19
C 31
(0.7)
P 		32.5
(1.1)
P 		18.1
(-3)
P 		26.5
(-0.6)
M 		39.3
(3)
P 		18.3
(-2.9)
P 		21
avr 27.3
(0.2) 		29.8
(1.1) 		19
(-3) 		25.4
(-0.6) 		34.7
(3) 		23.9
(-1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10834
Sequence Type Exemplar sequence
Representative Public ID M02B7.5 NCBI
Target Description M02B7.5 /REP_DB=WormBase Gene ID /WP=CE12328 /TR=Q94287 /GB=AAB09130.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068019 NCBI Caenorhabditis elegans M02B7.5 (M02B7.5) mRNA, complete cds. 11/11 None
SNAP00000028172 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3808075:3814095:-1 11/11 None
GENEFINDER00000028181 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3807509:3819318:-1 10/11 None
M02B7.5 ENSEMBL cdna:known chromosome:CEL140:IV:3807661:3819318:-1 gene:M02B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3808080-3819324(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B7.5
Entrez Gene 177142 Entrez gene
SwissProt Q94287 EMBL-EBI
WormBase CE34939 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.24823.1.S1_AT similar to IQ motif and Sec7 domain 2 cfa
HG-U133_PLUS_2:214819_AT IQ motif and Sec7 domain 2 hs
HG-U133A_2:214819_AT IQ motif and Sec7 domain 2 hs
HG-U133A:214819_AT IQ motif and Sec7 domain 2 hs
U133_X3P:HS.129892.0.S1_3P_X_AT IQ motif and Sec7 domain 2 hs
U133_X3P:HS.129892.0.S1_3P_AT IQ motif and Sec7 domain 2 hs
HG-U95AV2:34923_AT IQ motif and Sec7 domain 2 hs
HU35KSUBB:RC_T25506_AT IQ motif and Sec7 domain 2 hs
U133_X3P:HS.7483.0.A1_3P_AT IQ motif and Sec7 domain 2 hs
HG-U133_PLUS_2:229840_AT IQ motif and Sec7 domain 2 hs
HG-U133B:229840_AT IQ motif and Sec7 domain 2 hs
HG-U95B:51951_AT IQ motif and Sec7 domain 2 hs
MG-U74BV2:116212_AT IQ motif and Sec7 domain 2 mm
MOE430B:1436622_AT IQ motif and Sec7 domain 2 mm
MOUSE430_2:1436622_AT IQ motif and Sec7 domain 2 mm
MOE430B:1448063_AT IQ motif and Sec7 domain 2 mm
MOUSE430_2:1448063_AT IQ motif and Sec7 domain 2 mm
MOE430B:1444621_AT MKIAA0522 protein mm
MOUSE430_2:1444621_AT MKIAA0522 protein mm
MU19KSUBC:TC38737_AT MKIAA0522 protein mm
RAE230A:1374218_AT Similar to KIAA0522 protein rn
RAT230_2:1374218_AT Similar to KIAA0522 protein rn
RG-U34B:RC_AA998160_AT Similar to KIAA0522 protein rn
Protein Similarities
Method ID Description E-Value
blast AAB09130 Hypothetical protein M02B7.5 [Caenorhabditis elegans] ref|NP_500420.2| M02B7.5 [Caenorhabditis elegans] 0.0
blast CAE65663 Hypothetical protein CBG10729 [Caenorhabditis briggsae] 0.0
blast XP_396854 PREDICTED: similar to RE02556p [Apis mellifera] 7.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000904 EMBL-EBI SEC7-like domain 1.6E-97
Pfam IPR000904 EMBL-EBI SEC7-like domain 2.2E-104
Pfam IPR000904 EMBL-EBI SEC7-like domain 2.2E-104
Sequence
Target Sequence 
>C. ELEGANS:180232_AT
ttcaacaagtctccgatccaacaaaacgtcaatcttcatcagctcgcgaacgtgacgtct
tcctattcaatgatatgatcgtcgtggcgaaaggtgttcgtcgtggatccacgtcaatgg
ccggttgtacgtacactctgaagcagtggacgcttcttctcggagcacatgtcacagaat
tccagcgaggacagtacgagtttgggctcacaattacgtgccccaacaaggacaaaattc
actttaacgctcgcaatttcgaggatcggtgtcattttgtggccgatgtcaccgaatcga
ttcgagaagccactgaaatggagcaagttcggctggaaatggaaatggagcagcatacga
ctacgacgattcggccggataatcaaagagatagtggacttcctgatatggatgaatcta
tgaagctttcgaacggaagcaacagcagcgcaggctcctcaaactcttcaacaaacggcg
taaataactcttcattccgccgactttcgttcaattctctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAACAAGTCTCCGATCCAACAAA 629 683 1298 Antisense
AAAACGTCAATCTTCATCAGCTCGC 216 131 1320 Antisense
ACGTGACGTCTTCCTATTCAATGAT 61 95 1347 Antisense
AAAGGTGTTCGTCGTGGATCCACGT 538 121 1387 Antisense
GATCCACGTCAATGGCCGGTTGTAC 387 413 1403 Antisense
TTCTTCTCGGAGCACATGTCACAGA 246 689 1451 Antisense
TGGGCTCACAATTACGTGCCCCAAC 672 553 1500 Antisense
TTCACTTTAACGCTCGCAATTTCGA 296 685 1535 Antisense
GTCATTTTGTGGCCGATGTCACCGA 22 469 1568 Antisense
GCATACGACTACGACGATTCGGCCG 159 251 1650 Antisense
CCGACTTTCGTTCAATTCTCTGGAT 552 261 1797 Antisense
Sequence Source Affymetrix Proprietary Database