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[180231_at]

Description C37C3.9 /REP_DB=WormBase Gene ID /WP=CE27368 /TR=Q22917 /GB=AAC25864.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 13      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 78.2
(-1.6)
A 		83.3
(-1.2)
A 		55.3
(-3)
A 		150.9
(3)
P 		96
B 128.4
(0.8)
P 		61.9
(-2.8)
A 		58
(-3)
A 		168.5
(3)
P 		111
C 126.9
(3)
P 		65.5
(-1.1)
A 		37.7
(-3)
A 		124.5
(2.8)
P 		89
avr 111.2
(0.7) 		70.2
(-1.8) 		50.3
(-3) 		148
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1234
1 2 3 4 5 6 range
A 82.3
(-3)
P 		130
(-2.8)
P 		116.8
(-2.8)
P 		247.1
(-2.2)
P 		676.4
(0)
P 		1270.5
(3)
P 		1188
B 91.3
(-2.7)
P 		36.5
(-3)
P 		108.1
(-2.5)
P 		262.1
(-1.6)
P 		762.9
(1.6)
P 		980
(3)
P 		944
C 64
(-3)
P 		104.9
(-2.7)
P 		109.8
(-2.7)
P 		273.6
(-1.7)
P 		646.2
(0.6)
P 		1035.8
(3)
P 		972
avr 79.2
(-3) 		90.5
(-2.9) 		111.6
(-2.8) 		260.9
(-1.9) 		695.2
(0.6) 		1095.4
(3) 		1016
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 28.5
(3)
A 		18.1
(-1.4)
A 		14.4
(-3)
A 		22.1
(0.3)
P 		14
B 40.9
(3)
P 		15.3
(-2.6)
A 		13.4
(-3)
A 		35.9
(1.9)
P 		28
C 42
(3)
P 		18.8
(-1.8)
A 		13.1
(-3)
A 		21
(-1.4)
P 		29
avr 37.1
(3) 		17.4
(-2) 		13.6
(-3) 		26.3
(0.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 15.2
(-3)
P 		46.2
(-2.4)
P 		25.4
(-2.8)
P 		62.7
(-2)
P 		204.1
(0.9)
P 		309.3
(3)
P 		294
B 31.8
(-2.7)
P 		12.1
(-3)
P 		26.2
(-2.8)
P 		69.4
(-2)
P 		310
(2.1)
P 		365.4
(3)
P 		353
C 23.7
(-3)
P 		32
(-2.8)
P 		28
(-2.9)
P 		55
(-2.4)
P 		209.1
(0.4)
P 		346.8
(3)
P 		323
avr 23.6
(-3) 		30.1
(-2.9) 		26.5
(-2.9) 		62.4
(-2.3) 		241.1
(1.1) 		340.5
(3) 		317
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12027
Sequence Type Exemplar sequence
Representative Public ID C37C3.9 NCBI
Target Description C37C3.9 /REP_DB=WormBase Gene ID /WP=CE27368 /TR=Q22917 /GB=AAC25864.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072622 NCBI Caenorhabditis elegans C37C3.9 (C37C3.9) mRNA, complete cds. 11/11 A 
SNAP00000006080 ENSEMBL cdna:SNAP chromosome:CEL140:V:7855157:7856388:-1 11/11 None
GENEFINDER00000006094 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7855123:7856388:-1 10/11 None
C37C3.9 ENSEMBL cdna:known chromosome:CEL140:V:7854951:7856470:-1 gene:C37C3.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7855123-7856389(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37C3.9
Entrez Gene 179164 Entrez gene
SwissProt Q22917 EMBL-EBI
WormBase CE27368 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25864 Hypothetical protein C37C3.9 [Caenorhabditis elegans] ref|NP_505023.1| C37C3.9 [Caenorhabditis elegans] 0.0
blast CAE73167 Hypothetical protein CBG20563 [Caenorhabditis briggsae] 1.0E-132
blast AAC25864 Hypothetical protein C37C3.9 [Caenorhabditis elegans] ref|NP_505023.1| C37C3.9 [Caenorhabditis elegans] 1.0E-127
blast CAE73167 Hypothetical protein CBG20563 [Caenorhabditis briggsae] 8.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:180231_AT
aaaacgtgtgcacagttctcaggctatgcgacaaatacctgatgacgaatctgaaacaaa
attgcgttgattatctcaaagactacaatccggattcccgcgaacctaccgatatctttc
atttattctaccatttatgcttctcgctaaacgccgaatacgagcatgatcacagtttag
ctgatgttgccctagaagcgatgtttgtctgcctcgtggaattgtttaactcgacaaatg
tcaccaaattctaccgttttctcatagaattacaacgaaaaagcggtgaaaaggatagcg
agaatctgaaacgagttactgacgcagttcttcatggtggatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACGTGTGCACAGTTCTCAGGCT 392 131 395 Antisense
GTTCTCAGGCTATGCGACAAATACC 247 439 409 Antisense
CAAAGACTACAATCCGGATTCCCGC 638 191 471 Antisense
GCGAACCTACCGATATCTTTCATTT 414 289 494 Antisense
ATTCTACCATTTATGCTTCTCGCTA 495 11 519 Antisense
GCTTCTCGCTAAACGCCGAATACGA 638 305 533 Antisense
ACAGTTTAGCTGATGTTGCCCTAGA 664 107 566 Antisense
TAGAAGCGATGTTTGTCTGCCTCGT 557 651 587 Antisense
GTCTGCCTCGTGGAATTGTTTAACT 146 471 601 Antisense
ATGTCACCAAATTCTACCGTTTTCT 501 45 632 Antisense
TGACGCAGTTCTTCATGGTGGATCC 627 569 714 Antisense
Sequence Source Affymetrix Proprietary Database