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[180230_at]

Description W03D8.1 /REP_DB=WormBase Gene ID /WP=CE18321 /TR=O45004 /GB=AAK21496.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3.3
(-3)
A 		42.4
(3)
A 		9.3
(-2.1)
A 		5.7
(-2.6)
A 		39
B 4.5
(-3)
A 		13.4
(3)
A 		6.4
(-1.7)
A 		13.3
(2.9)
A 		9
C 3.1
(-3)
A 		11.7
(-0.4)
A 		18.2
(1.5)
A 		23.3
(3)
A 		20
avr 3.6
(-3) 		22.5
(3) 		11.3
(-0.6) 		14.1
(0.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.8
(-1.6)
A 		8.3
(0.1)
A 		3.7
(-3)
A 		5.8
(-1.6)
A 		12.5
(3)
A 		7.2
(-0.6)
A 		9
B 3.8
(-1.7)
A 		4.4
(-0.9)
A 		5.6
(0.8)
A 		7.2
(3)
A 		3.7
(-1.9)
A 		2.9
(-3)
A 		4
C 2.8
(-3)
A 		7.5
(-1)
A 		5.7
(-1.8)
A 		16.9
(3)
A 		7.6
(-1)
A 		3.6
(-2.7)
A 		14
avr 4.1
(-3) 		6.7
(-0.4) 		5
(-2.1) 		10
(3) 		7.9
(0.9) 		4.6
(-2.5) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-2.7)
A 		9.2
(3)
A 		2.4
(-1.9)
A 		0.8
(-3)
A 		8
B 1.5
(-3)
A 		3.3
(3)
A 		1.5
(-3)
A 		2.8
(1.3)
A 		2
C 1
(-3)
A 		3.4
(-0.3)
A 		6.3
(3)
A 		3.9
(0.3)
A 		5
avr 1.2
(-3) 		5.3
(3) 		3.4
(0.2) 		2.5
(-1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.1
(-2.4)
A 		3
(1.4)
A 		0.8
(-3)
A 		1.5
(-1.6)
A 		3.8
(3)
A 		1.8
(-1)
A 		3
B 1.3
(-1.5)
A 		1.5
(0)
A 		1.4
(-0.8)
A 		1.9
(3)
A 		1.5
(0)
A 		1.1
(-3)
A 		1
C 1.1
(-3)
A 		2.3
(0.1)
A 		1.4
(-2.2)
A 		3.4
(3)
A 		2.5
(0.7)
A 		1.2
(-2.7)
A 		2
avr 1.2
(-3) 		2.3
(1.7) 		1.2
(-3) 		2.3
(1.7) 		2.6
(3) 		1.4
(-2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.142
Sequence Type Exemplar sequence
Representative Public ID W03D8.1 NCBI
Target Description W03D8.1 /REP_DB=WormBase Gene ID /WP=CE18321 /TR=O45004 /GB=AAK21496.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058645 NCBI Caenorhabditis elegans W03D8.1 (W03D8.1) mRNA, complete cds. 11/11 None
W03D8.1 ENSEMBL cdna:known chromosome:CEL140:I:2787856:2790310:-1 gene:W03D8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016954 5/11 Cross Hyb Matching Probes None
GENEFINDER00000016968 5/11 Cross Hyb Matching Probes None
GENEFINDER00000016971 2/11 Cross Hyb Matching Probes None
SNAP00000016955 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2787855-2790571(-) 84.66 100.0
Public Domain and Genome References
Gene Title
Ensembl W03D8.1
Entrez Gene 189155 Entrez gene
SwissProt O45004 EMBL-EBI
WormBase CE32224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491046 W03D8.1 [Caenorhabditis elegans] gb|AAK21496.2| Hypothetical protein W03D8.1 [Caenorhabditis elegans] 0.0
blast T32938 hypothetical protein W03D8.1 - Caenorhabditis elegans 1.0E-171
Sequence
Target Sequence 
>C. ELEGANS:180230_AT
cctgagaagcctgaagcactaccccaagcgcaagattcgtattgtggaaatgtgtacctg
tgctttgatgaggatgtttttggatttgcgagtaatgggaatcacacaatggcctcaatc
atacgattcaatatactgcttctcttgcttccatttgcattttgttcaactactacaaca
gaggagccggatggttcaaactccactgaaggagctactactgtagccgggactactgta
gaatttactactgaaaatacaactgtcatcgggactactgtagctgacactactacgctg
aaaactacaaccgcttcaacgagtactgcaggtccaactaaaagcagcacgaagacgaaa
acgacagttacagcaagaccggaaacaaagccagaagctaggacaacaactggaatccaa
ctttccagaaatgatatcccaattgattgctcggatgctgacctacaaaaatgtgtgcct
gcctatattatgcctaccgatttgaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGAGAAGCCTGAAGCACTACCCC 16 267 901 Antisense
ACTACCCCAAGCGCAAGATTCGTAT 615 99 918 Antisense
GGGAATCACACAATGGCCTCAATCA 660 493 997 Antisense
TTCAATATACTGCTTCTCTTGCTTC 472 685 1027 Antisense
GCTACTACTGTAGCCGGGACTACTG 296 285 1114 Antisense
CTGTCATCGGGACTACTGTAGCTGA 365 237 1163 Antisense
GCTGACACTACTACGCTGAAAACTA 208 297 1183 Antisense
AACTACAACCGCTTCAACGAGTACT 695 139 1203 Antisense
TTGATTGCTCGGATGCTGACCTACA 304 705 1343 Antisense
AATGTGTGCCTGCCTATATTATGCC 659 163 1370 Antisense
TATATTATGCCTACCGATTTGACCG 423 661 1384 Antisense
Sequence Source Affymetrix Proprietary Database