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[180229_s_at]

Description F08E10.7 /REP_DB=WormBase Gene ID /WP=CE18577 /TR=Q9XXP4 /GB=CAA16500.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 46      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 973
1 2 3 4 range
A 688.1
(3)
P 		156.5
(-1.8)
P 		35
(-2.9)
A 		19.4
(-3)
A 		669
B 936.7
(3)
P 		144.6
(-2.2)
P 		41.4
(-2.9)
P 		21.2
(-3)
A 		916
C 986.5
(3)
P 		197.9
(-1.9)
P 		48.2
(-2.8)
P 		13.2
(-3)
A 		973
avr 870.4
(3) 		166.3
(-2) 		41.5
(-2.8) 		17.9
(-3) 		853

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 236.1
(-0.6)
P 		333.2
(0.5)
P 		533.6
(3)
P 		225.5
(-0.8)
P 		62.5
(-2.8)
P 		43.6
(-3)
A 		490
B 232.1
(-0.3)
P 		262.3
(0.1)
P 		476.8
(3)
P 		171.6
(-1.1)
P 		90.4
(-2.2)
P 		27.2
(-3)
A 		450
C 287.1
(1.6)
P 		297.2
(1.8)
P 		363.9
(3)
P 		239.7
(0.7)
P 		98.6
(-1.9)
P 		41.3
(-3)
A 		323
avr 251.8
(0.1) 		297.6
(0.7) 		458.1
(3) 		212.3
(-0.5) 		83.8
(-2.3) 		37.4
(-3) 		421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 250.5
(3)
P 		34
(-2.2)
P 		9.2
(-2.8)
A 		2.8
(-3)
A 		248
B 298.7
(3)
P 		35.7
(-2.4)
P 		9.6
(-2.9)
P 		4.5
(-3)
A 		294
C 326.6
(3)
P 		56.9
(-2)
P 		16.8
(-2.7)
P 		2.2
(-3)
A 		324
avr 291.9
(3) 		42.2
(-2.2) 		11.9
(-2.8) 		3.2
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 43.5
(-1.2)
P 		118.5
(3)
P 		116.2
(2.9)
P 		57.2
(-0.4)
P 		18.9
(-2.5)
P 		10.6
(-3)
A 		108
B 80.8
(1)
P 		87.3
(1.4)
P 		115.8
(3)
P 		45.4
(-1)
P 		36.7
(-1.5)
P 		10.1
(-3)
A 		106
C 106.4
(3)
P 		90.7
(2)
P 		92.6
(2.1)
P 		48.2
(-0.8)
P 		31.9
(-1.8)
P 		13.8
(-3)
A 		93
avr 76.9
(1.1) 		98.8
(2.4) 		108.2
(3) 		50.3
(-0.6) 		29.2
(-1.9) 		11.5
(-3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180229_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12905
Sequence Type Exemplar sequence
Representative Public ID F08E10.7 NCBI
Target Description F08E10.7 /REP_DB=WormBase Gene ID /WP=CE18577 /TR=Q9XXP4 /GB=CAA16500.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075028(11), NM_074963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075028 NCBI Caenorhabditis elegans F08E10.7 (F08E10.7) mRNA, complete cds. 11/11 A 
NM_074963 NCBI Caenorhabditis elegans T19C9.5 (T19C9.5) mRNA, complete cds. 11/11 A 
SNAP00000010313 ENSEMBL cdna:SNAP chromosome:CEL140:V:17229756:17230538:1 11/11 None
GENEFINDER00000010321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17229756:17232625:1 11/11 None
T19C9.5 ENSEMBL cdna:known chromosome:CEL140:V:17229756:17230538:1 gene:T19C9.5 11/11 A 
F08E10.7 ENSEMBL cdna:known chromosome:CEL140:V:17489007:17489781:1 gene:F08E10.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17489006-17489781(+) 100.0 100.0
chrV:17229755-17230538(+) 95.46 95.46
Public Domain and Genome References
Gene Title

Ensembl T19C9.5
F08E10.7
Entrez Gene 184188 Entrez gene
188600 Entrez gene
SwissProt Q9XXP4 EMBL-EBI
O45790 EMBL-EBI
WormBase CE18577 Wormbase
CE16422 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 1.0E-115
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-115
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-110
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-40
Sequence
Target Sequence 
>C. ELEGANS:180229_S_AT
tgcttcgcatggactttgggaacgctacagcatctccaaatcgtcaaacatgcaacttct
gtcctggaatgagtcattggttgctgaagtcgagaatgaaaaatactactgtgaacctgc
tgataacaaaaacctacctatcaaacttggagataacatctaccaatacgatgtcaatac
ttatgacgatattgatggcgttggagcaatgggaagtattaataaggatacacacaatgc
gctgaaatccgaagagaaagctacaaagaatcgtcttagacaaatgctttactctaaatc
taagtcaattggatgtatctacgaaagttgtgacaagattgattcaaaggggatcaacta
taacactcgtcttgttatctgcaagtatagtcctcctttggagaatattgatgagcaact
gttcgacaaaggagagccatgctctaactgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTTCGCATGGACTTTGGGAACGC 223 577 144 Antisense
ACAGCATCTCCAAATCGTCAAACAT 438 109 170 Antisense
TCTCCAAATCGTCAAACATGCAACT 660 607 176 Antisense
AAACCTACCTATCAAACTTGGAGAT 16 111 273 Antisense
ATGACGATATTGATGGCGTTGGAGC 470 45 326 Antisense
GATGGCGTTGGAGCAATGGGAAGTA 361 405 337 Antisense
ATCGTCTTAGACAAATGCTTTACTC 139 35 413 Antisense
TCTAAGTCAATTGGATGTATCTACG 705 611 442 Antisense
ATGTATCTACGAAAGTTGTGACAAG 355 47 456 Antisense
CTGTTCGACAAAGGAGAGCCATGCT 675 235 562 Antisense
AAGGAGAGCCATGCTCTAACTGCCC 641 159 572 Antisense
Sequence Source Affymetrix Proprietary Database