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[180228_at]

Description F08E10.7 /REP_DB=WormBase Gene ID /WP=CE18577 /TR=Q9XXP4 /GB=CAA16500.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 46      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3276
1 2 3 4 range
A 3281.1
(3)
P 		1013.2
(-1.3)
P 		292.5
(-2.6)
A 		79.6
(-3)
A 		3202
B 2918.3
(3)
P 		742
(-1.5)
P 		236
(-2.5)
A 		4.7
(-3)
A 		2914
C 3025.1
(3)
P 		737.7
(-1.7)
P 		297.8
(-2.6)
A 		105.8
(-3)
A 		2919
avr 3074.8
(3) 		831
(-1.5) 		275.4
(-2.6) 		63.4
(-3) 		3011

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1841
1 2 3 4 5 6 range
A 855.1
(0.4)
P 		1281.4
(2.2)
P 		1457.4
(3)
P 		1161.9
(1.7)
P 		258.2
(-2.3)
M 		91.8
(-3)
A 		1366
B 1036.2
(2)
P 		1070.6
(2.2)
P 		1220.4
(3)
P 		885.9
(1.1)
P 		136.5
(-3)
P 		148.3
(-2.9)
A 		1084
C 966.6
(-0.3)
P 		1220.5
(0.6)
P 		1932.6
(3)
P 		1138.3
(0.3)
P 		265.4
(-2.6)
P 		160.9
(-3)
A 		1772
avr 952.6
(0.5) 		1190.8
(1.5) 		1536.8
(3) 		1062
(1) 		220
(-2.6) 		133.7
(-3) 		1403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1194
1 2 3 4 range
A 1194.6
(3)
P 		219.9
(-1.9)
P 		76.5
(-2.7)
A 		11.6
(-3)
A 		1183
B 930.6
(3)
P 		183.2
(-1.8)
P 		54.7
(-2.7)
A 		1
(-3)
A 		930
C 1001.4
(3)
P 		212.1
(-1.8)
P 		103.8
(-2.5)
A 		17.8
(-3)
A 		984
avr 1042.2
(3) 		205.1
(-1.9) 		78.3
(-2.6) 		10.1
(-3) 		1032

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 157.6
(-1.1)
P 		455.7
(3)
P 		317.4
(1.1)
P 		294.7
(0.8)
P 		77.9
(-2.2)
M 		22.4
(-3)
A 		433
B 360.5
(3)
P 		356.4
(2.9)
P 		296.4
(1.7)
P 		234.6
(0.5)
P 		55.4
(-3)
P 		55.3
(-3)
A 		305
C 358.3
(1.2)
P 		372.4
(1.4)
P 		491.9
(3)
P 		228.9
(-0.6)
P 		85.9
(-2.6)
P 		53.8
(-3)
A 		438
avr 292.1
(1.2) 		394.8
(3) 		368.6
(2.6) 		252.7
(0.6) 		73.1
(-2.5) 		43.8
(-3) 		351
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12905
Sequence Type Exemplar sequence
Representative Public ID F08E10.7 NCBI
Target Description F08E10.7 /REP_DB=WormBase Gene ID /WP=CE18577 /TR=Q9XXP4 /GB=CAA16500.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075028 NCBI Caenorhabditis elegans F08E10.7 (F08E10.7) mRNA, complete cds. 11/11 A 
F08E10.7 ENSEMBL cdna:known chromosome:CEL140:V:17489007:17489781:1 gene:F08E10.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17489006-17489781(+) 100.0 100.0
chrV:17229755-17230538(+) 95.46 95.46
Public Domain and Genome References
Gene Title
Ensembl F08E10.7
Entrez Gene 184188 Entrez gene
SwissProt Q9XXP4 EMBL-EBI
WormBase CE18577 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 1.0E-115
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-110
blast NP_504963 C50E3.10 [Caenorhabditis elegans] gb|AAB04885.1| Hypothetical protein C50E3.10 [Caenorhabditis elegans] 6.0E-66
Sequence
Target Sequence 
>C. ELEGANS:180228_AT
ttactgcagctgcccatgctgaacgtcacttcaatccacaacatcaatggaacgcagaag
caatcgataatattgttttcattcataacaagctaagaaacgctgcttcgcatggacttt
gggaacgctacagcatctccaaatcgtcaaacatgcaacttctgtcctggaatgagtcat
tggttgctgaagtcgagaatgaaaaatactactgtgaacctgctgataacaaaaacctac
ctatcaaacttggagataacatctaccaatacgatgtcaatacttatgacgatattgatg
gcgttggagcaatgggaagtattaataaggatacacacaatgcgctgaaatccgaagaga
aagctacaaagaatcgtcttagacaaatgctttactctaaatctaagtcaattggatgta
tctacgaaagttgtgacaagattgattcaaaggggatcaactataacactcgtcttgtta
tctgcaagtatagtcctcctttggagaatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTGCAGCTGCCCATGCTGAACG 198 681 41 Antisense
GCCCATGCTGAACGTCACTTCAATC 469 287 52 Antisense
TGCTGAACGTCACTTCAATCCACAA 96 583 57 Antisense
GTCACTTCAATCCACAACATCAATG 487 465 65 Antisense
GAGTCATTGGTTGCTGAAGTCGAGA 386 399 214 Antisense
TTGGTTGCTGAAGTCGAGAATGAAA 561 695 220 Antisense
CTGAAATCCGAAGAGAAAGCTACAA 229 207 385 Antisense
GAGAAAGCTACAAAGAATCGTCTTA 354 391 397 Antisense
AACACTCGTCTTGTTATCTGCAAGT 360 135 505 Antisense
CTGCAAGTATAGTCCTCCTTTGGAG 251 209 522 Antisense
GTATAGTCCTCCTTTGGAGAATATT 14 455 528 Antisense
Sequence Source Affymetrix Proprietary Database