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[180227_at]

Description F21H7.10 /REP_DB=WormBase Gene ID /WP=CE15879 /TR=O18090 /GB=CAB07595.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 40.6
(-3)
A 		61.6
(-1.8)
A 		77.1
(-1)
A 		148.7
(3)
A 		108
B 75.3
(2.4)
A 		79.4
(3)
A 		37.9
(-3)
A 		64.4
(0.8)
A 		42
C 91.4
(0.1)
A 		43.4
(-2)
A 		19.3
(-3)
A 		157.8
(3)
A 		139
avr 69.1
(-1.1) 		61.5
(-1.7) 		44.8
(-3) 		123.6
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 87.7
(1.3)
A 		63.8
(-3)
A 		76.6
(-0.7)
A 		65.9
(-2.6)
A 		67.6
(-2.3)
A 		96.8
(3)
A 		33
B 52.7
(-2.5)
A 		87.4
(3)
A 		85.2
(2.6)
A 		56.3
(-1.9)
A 		49.7
(-3)
A 		52.9
(-2.5)
A 		38
C 51
(-2.5)
A 		79.9
(0.9)
A 		97.2
(3)
A 		74
(0.2)
A 		46.9
(-3)
A 		89.1
(2)
A 		50
avr 63.8
(-1.3) 		77
(1.2) 		86.3
(3) 		65.4
(-1) 		54.7
(-3) 		79.6
(1.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.8
(-2)
A 		13.4
(-3)
A 		20.2
(1.9)
A 		21.8
(3)
A 		8
B 24
(3)
A 		19.6
(1.3)
A 		8.8
(-3)
A 		13.7
(-1.1)
A 		15
C 30.2
(3)
A 		12.5
(-1.5)
A 		6.7
(-3)
A 		26.6
(2.1)
A 		24
avr 23
(3) 		15.2
(-1.2) 		11.9
(-3) 		20.7
(1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 16.2
(-3)
A 		22.7
(2.3)
A 		16.7
(-2.6)
A 		16.7
(-2.6)
A 		20.4
(0.4)
A 		23.6
(3)
A 		7
B 18.3
(-1.6)
A 		29.1
(3)
A 		20.7
(-0.5)
A 		14.9
(-3)
A 		20.2
(-0.8)
A 		19.7
(-1)
A 		14
C 18.9
(-1.4)
A 		24.4
(0.8)
A 		24.7
(0.9)
A 		14.9
(-3)
A 		15.2
(-2.9)
A 		29.8
(3)
A 		15
avr 17.8
(-1.6) 		25.4
(3) 		20.7
(0.2) 		15.5
(-3) 		18.6
(-1.1) 		24.4
(2.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180227_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13841
Sequence Type Exemplar sequence
Representative Public ID F21H7.10 NCBI
Target Description F21H7.10 /REP_DB=WormBase Gene ID /WP=CE15879 /TR=O18090 /GB=CAB07595.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074701 NCBI Caenorhabditis elegans F21H7.10 (F21H7.10) mRNA, complete cds. 11/11 None
F21H7.10 ENSEMBL cdna:known chromosome:CEL140:V:16256900:16258893:-1 gene:F21H7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16256899-16258893(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21H7.10
Entrez Gene 184798 Entrez gene
SwissProt O18090 EMBL-EBI
WormBase CE15879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07674 Hypothetical protein F21H7.10 [Caenorhabditis elegans] emb|CAB07595.1| Hypothetical protein F21H7.10 [Caenorhabditis elegans] ref|NP_507102.1| F21H7.10 [Caenorhabditis elegans] 0.0
blast AAF99911 Hypothetical protein F22F7.6 [Caenorhabditis elegans] ref|NP_503575.2| F22F7.6 [Caenorhabditis elegans] 1.0E-138
blast CAE17897 Hypothetical protein K08H2.9 [Caenorhabditis elegans] ref|NP_001024774.1| K08H2.9 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507102.1 1 7-24
F21H7.10 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:180227_AT
ttttgagtttcaccatcgctatttcccagaaggacatcatattgatgggcttgacgattg
gttcaggacttcgattcattcaggggtggtcaccacgaaggaagtagcttaccctggcta
tctctgggaagtgcaaacaattctgcatcgcaacgacccttacaacgctgactatttccc
atccaggatcaaggttatgcactccttggtgtatgccctctgtcgtgcagggtacacatt
ccatgtgccaactcatgtgtttgattctcataggggcatcaagcataccaatacgatata
ctcaaaagctacgatagcccaccaagaagcgtatgcaatgaaggaagctggtgatcggta
catc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGAGTTTCACCATCGCTATTTC 417 677 840 Antisense
GGGCTTGACGATTGGTTCAGGACTT 313 493 886 Antisense
CGATTCATTCAGGGGTGGTCACCAC 132 249 911 Antisense
CTTACCCTGGCTATCTCTGGGAAGT 25 221 947 Antisense
AAACAATTCTGCATCGCAACGACCC 620 127 974 Antisense
CTGACTATTTCCCATCCAGGATCAA 528 237 1007 Antisense
TTATGCACTCCTTGGTGTATGCCCT 690 677 1034 Antisense
TGCCCTCTGTCGTGCAGGGTACACA 210 583 1053 Antisense
GTGCCAACTCATGTGTTTGATTCTC 665 477 1084 Antisense
GATAGCCCACCAAGAAGCGTATGCA 498 423 1152 Antisense
GAAGGAAGCTGGTGATCGGTACATC 493 331 1179 Antisense
Sequence Source Affymetrix Proprietary Database