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[180226_s_at]

Description W10D9.4 /REP_DB=WormBase Gene ID /WP=CE14792 /TR=O17286 /GB=AAB71054.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 427.9
(3)
A
369
(-0.8)
A
333.7
(-3)
A
416.2
(2.3)
A
94
B 458.7
(3)
A
338.2
(-0.7)
A
264.1
(-3)
A
366.6
(0.2)
A
195
C 476.2
(3)
M
353
(-1.3)
A
306.2
(-3)
A
323.5
(-2.4)
A
170
avr 454.3
(3)
353.4
(-1)
301.3
(-3)
368.8
(-0.4)
153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 228
(-2.6)
A
378
(0.6)
A
210.9
(-3)
A
259.4
(-2)
A
333
(-0.4)
A
490.1
(3)
P
279
B 307.7
(-0.2)
A
299.4
(-1)
A
303.3
(-0.6)
A
278.8
(-3)
A
341.3
(3)
P
338.5
(2.7)
P
63
C 339.1
(0.4)
A
415
(2.6)
A
272.3
(-1.6)
A
223.5
(-3)
A
401.6
(2.2)
A
429.5
(3)
P
206
avr 291.6
(-1.6)
364.1
(1)
262.2
(-2.7)
253.9
(-3)
358.6
(0.8)
419.4
(3)
166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 155.8
(3)
A
80.1
(-1.8)
A
87.2
(-1.3)
A
60.9
(-3)
A
95
B 146.3
(3)
A
83.5
(-1.4)
A
61.2
(-3)
A
78.1
(-1.8)
A
85
C 157.6
(3)
M
101.5
(-0.3)
A
106.7
(0)
A
54.5
(-3)
A
103
avr 153.2
(3)
88.4
(-1.4)
85
(-1.6)
64.5
(-3)
89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 42
(-3)
A
134.4
(3)
A
45.9
(-2.7)
A
65.8
(-1.5)
A
100.5
(0.8)
A
119.3
(2)
P
92
B 107.1
(0.1)
A
99.6
(-0.6)
A
73.6
(-3)
A
73.9
(-3)
A
138.7
(3)
P
126.2
(1.8)
P
65
C 125.7
(1.9)
A
126.6
(2)
A
69.3
(-1.5)
A
44.9
(-3)
A
129.9
(2.2)
A
143.8
(3)
P
99
avr 91.6
(-0.4)
120.2
(2.2)
62.9
(-2.9)
61.5
(-3)
123
(2.4)
129.8
(3)
68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180226_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4676
Sequence Type Exemplar sequence
Representative Public ID W10D9.4 NCBI
Target Description W10D9.4 /REP_DB=WormBase Gene ID /WP=CE14792 /TR=O17286 /GB=AAB71054.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061339(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_061339 NCBI Caenorhabditis elegans W10D9.4 (W10D9.4) mRNA, complete cds. 11/11 None
SNAP00000024352 ENSEMBL cdna:SNAP chromosome:CEL140:II:456219:470474:-1 11/11 None
GENEFINDER00000024359 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:462012:467335:-1 11/11 None
W10D9.4 ENSEMBL cdna:known chromosome:CEL140:II:461684:467364:-1 gene:W10D9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:462011-467335(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10D9.4
Entrez Gene 173435 Entrez gene
SwissProt O17286 EMBL-EBI
WormBase CE14792 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18987_G_AT histone-like transcription factor (CBF/NF-Y) family protein at
ATGENOME1:18986_AT histone-like transcription factor (CBF/NF-Y) family protein at
ATH1-121501:266171_AT histone-like transcription factor (CBF/NF-Y) family protein at
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71054 Hypothetical protein W10D9.4 [Caenorhabditis elegans] ref|NP_493740.1| W10D9.4 [Caenorhabditis elegans] 0.0
blast CAE62881 Hypothetical protein CBG07067 [Caenorhabditis briggsae] 1.0E-89
blast CAE62881 Hypothetical protein CBG07067 [Caenorhabditis briggsae] 2.0E-89
blast AAB71057 Hypothetical protein W10D9.3 [Caenorhabditis elegans] ref|NP_493739.1| W10D9.3 [Caenorhabditis elegans] 7.0E-46
blast XP_394667 PREDICTED: similar to hypothetical protein [Apis mellifera] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR003958 EMBL-EBI Transcription factor CBF/NF-Y/archaeal histone 2.3E-31
Pfam IPR003958 EMBL-EBI Transcription factor CBF/NF-Y/archaeal histone 2.3E-31
Sequence
Target Sequence
>C. ELEGANS:180226_S_AT
gtacattgaatacccgcgcagatggatattatatggaggagccaatggagccgatgccga
tggaagaagtagaaattgaagaacacgaggaaattattgagcaagattcacttggagcca
tcgccttggagcaacaaggccaaatgcagatttatgtggatccaaagacgaaacaacatt
ttgcagcgaaagaaactccgaatggcatggaactctaccctctgatcatccaggacaccc
cactgcaattggaaaatgtttctgggccaaatcaattcgttatgaatatgccagatggac
gagcaataccccacggaatgggacaagaagagcctcagccagtgtcaagtagctcagtta
tgcggaaaatcggtcaaaatccgtcttcctatgcccagcagcaccaccacgtcagccacg
tggaacaacacgatgacgtggaatatgaagaagaagaagaagtagatcaagtagaggagg
atacagtacccgttccaat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GTACATTGAATACCCGCGCAGATGG 8 461 662 Antisense
AATGGAGCCGATGCCGATGGAAGAA 700 161 705 Antisense
CAAGATTCACTTGGAGCCATCGCCT 42 185 763 Antisense
GAGCCATCGCCTTGGAGCAACAAGG 315 385 776 Antisense
CCGAATGGCATGGAACTCTACCCTC 522 261 859 Antisense
GGACACCCCACTGCAATTGGAAAAT 100 525 894 Antisense
CAGATGGACGAGCAATACCCCACGG 244 205 953 Antisense
AGAAGAGCCTCAGCCAGTGTCAAGT 115 75 987 Antisense
GTGTCAAGTAGCTCAGTTATGCGGA 710 479 1003 Antisense
CGGTCAAAATCCGTCTTCCTATGCC 646 243 1032 Antisense
AGGAGGATACAGTACCCGTTCCAAT 157 55 1136 Antisense
Sequence Source Affymetrix Proprietary Database